Information for 7-TCAAAACATATAG (Motif 6)

A C G T A G T C C G T A C T G A C G T A C T G A G T A C C G T A G A C T G T C A A G C T C G T A A T C G
Reverse Opposite:
A T G C A C G T C T G A A C G T C G T A C G A T A C T G A G C T A C G T A G C T A C G T A C T G C G T A
p-value:1e-11
log p-value:-2.679e+01
Information Content per bp:1.835
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.3 +/- 31.8bp
Average Position of motif in Background44.8 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TCAAAACATATAG
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A C G T A C T G A G T A C C G T A G A C T G T C A A G C T C G T A A T C G
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0123.1_Foxl1_2/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TCAAAACATATAG
ATATCAAAACAAAACA
 A C G T A C G T A C G T A C G T A G T C C G T A C T G A C G T A C T G A G T A C C G T A G A C T G T C A A G C T C G T A A T C G
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

PB0116.1_Elf3_2/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TCAAAACATATAG--
GTTCAAAAAAAAAATTC
 A C G T A C G T A C G T A G T C C G T A C T G A C G T A C T G A G T A C C G T A G A C T G T C A A G C T C G T A A T C G A C G T A C G T
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TCAAAACATATAG-
TGCCAAAATAAACANN
 A C G T A C G T A C G T A G T C C G T A C T G A C G T A C T G A G T A C C G T A G A C T G T C A A G C T C G T A A T C G A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

PB0120.1_Foxj1_2/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TCAAAACATATAG
ATGTCACAACAACAC-
 A C G T A C G T A C G T A C G T A G T C C G T A C T G A C G T A C T G A G T A C C G T A G A C T G T C A A G C T C G T A A T C G
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TCAAAACATATAG
NTTNAGAACAATTA-
 A C G T A C G T A C G T A G T C C G T A C T G A C G T A C T G A G T A C C G T A G A C T G T C A A G C T C G T A A T C G
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:7
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------TCAAAACATATAG
TATAGATCAAAGGAAAA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A C G T A C T G A G T A C C G T A G A C T G T C A A G C T C G T A A T C G
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A A C G T A C G T

PB0083.1_Tcf7_1/Jaspar

Match Rank:8
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------TCAAAACATATAG
TATAGATCAAAGGAAAA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A C G T A C T G A G T A C C G T A G A C T G T C A A G C T C G T A A T C G
A C G T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C A T G C T A A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:TCAAAACATATAG--
---AAACAAACATTC
 A C G T A G T C C G T A C T G A C G T A C T G A G T A C C G T A G A C T G T C A A G C T C G T A A T C G A C G T A C G T
A C G T A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----TCAAAACATATAG
CGGTTTCAAA--------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C T G A C G T A C T G A G T A C C G T A G A C T G T C A A G C T C G T A A T C G
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T