Information for 4-CACHVGGGGCHGAACT (Motif 3)

A G T C C G T A A G T C G A C T T C G A A C T G C T A G A C T G A C T G G T A C G C T A A C T G G C T A G C T A A T G C C G A T
Reverse Opposite:
C G T A A T C G C G A T C G A T A G T C C G A T A C T G A G T C G T A C G A T C A G T C A C G T C T G A A C T G A C G T A C T G
p-value:1e-17
log p-value:-3.935e+01
Information Content per bp:1.770
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif3.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.8 +/- 21.0bp
Average Position of motif in Background40.8 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)-1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CACHVGGGGCHGAACT--
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A G T C C G T A A G T C G A C T T C G A A C T G C T A G A C T G A C T G G T A C G C T A A C T G G C T A G C T A A T G C C G A T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CACHVGGGGCHGAACT
TGGCCACCAGGGGGCGCTA-
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C G A C T T C G A A C T G C T A G A C T G A C T G G T A C G C T A A C T G G C T A G C T A A T G C C G A T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CACHVGGGGCHGAACT
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A G T C C G T A A G T C G A C T T C G A A C T G C T A G A C T G A C T G G T A C G C T A A C T G G C T A G C T A A T G C C G A T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:4
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CACHVGGGGCHGAACT
TGCCCTGAGGGCA-----
 A C G T A C G T A G T C C G T A A G T C G A C T T C G A A C T G C T A G A C T G A C T G G T A C G C T A A C T G G C T A G C T A A T G C C G A T
G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CACHVGGGGCHGAACT
TGCCCNNAGGGCA-----
 A C G T A C G T A G T C C G T A A G T C G A C T T C G A A C T G C T A G A C T G A C T G G T A C G C T A A C T G G C T A G C T A A T G C C G A T
G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T

Myc/MA0147.2/Jaspar

Match Rank:6
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CACHVGGGGCHGAACT
AAGCACATGG---------
 A C G T A C G T A C G T A G T C C G T A A G T C G A C T T C G A A C T G C T A G A C T G A C T G G T A C G C T A A C T G G C T A G C T A A T G C C G A T
T C G A C T G A T A C G A G T C C G T A A G T C C T G A A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:7
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CACHVGGGGCHGAACT
TGCCCTNAGGGCA-----
 A C G T A C G T A G T C C G T A A G T C G A C T T C G A A C T G C T A G A C T G A C T G G T A C G C T A A C T G G C T A G C T A A T G C C G A T
G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T A C G T A C G T A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CACHVGGGGCHGAACT
TCCCCTGGGGAC-----
 A C G T A G T C C G T A A G T C G A C T T C G A A C T G C T A G A C T G A C T G G T A C G C T A A C T G G C T A G C T A A T G C C G A T
A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C A C G T A C G T A C G T A C G T A C G T

POL003.1_GC-box/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:forward strand
Alignment:CACHVGGGGCHGAACT-
---AGGGGGCGGGGCTG
 A G T C C G T A A G T C G A C T T C G A A C T G C T A G A C T G A C T G G T A C G C T A A C T G G C T A G C T A A T G C C G A T A C G T
A C G T A C G T A C G T C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:10
Score:0.51
Offset:-6
Orientation:reverse strand
Alignment:------CACHVGGGGCHGAACT
NNTNCGCACCTGTNGAN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C G A C T T C G A A C T G C T A G A C T G A C T G G T A C G C T A A C T G G C T A G C T A A T G C C G A T
G C A T C A G T G C A T A G C T G A T C T C A G G T A C C T G A A T G C T A G C A C G T A C T G A C G T C A T G C A T G G T C A A G C T A C G T A C G T A C G T A C G T A C G T