Information for 19-GTCACTNAATGCTKCA (Motif 29)

C A T G C G A T A T G C C G T A A G T C A C G T A C T G C G T A G T C A A C G T A C T G A T G C C A G T A C T G G T A C G T C A
Reverse Opposite:
A C G T A C T G G T A C G C T A A T C G T G A C C G T A A C G T A C G T A G T C G T C A A C T G A C G T A T C G C G T A G A T C
p-value:1e-8
log p-value:-1.851e+01
Information Content per bp:1.738
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif16.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets56.4 +/- 18.6bp
Average Position of motif in Background44.9 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX3-2/MA0122.2/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GTCACTNAATGCTKCA
ACCACTTAA-------
 C A T G C G A T A T G C C G T A A G T C A C G T A C T G C G T A G T C A A C G T A C T G A T G C C A G T A C T G G T A C G T C A
T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:2
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GTCACTNAATGCTKCA
ACCACTTAA-------
 C A T G C G A T A T G C C G T A A G T C A C G T A C T G C G T A G T C A A C G T A C T G A T G C C A G T A C T G G T A C G T C A
T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GTCACTNAATGCTKCA
MRSCACTYAA-------
 A C G T C A T G C G A T A T G C C G T A A G T C A C G T A C T G C G T A G T C A A C G T A C T G A T G C C A G T A C T G G T A C G T C A
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GTCACTNAATGCTKCA
RGGGCACTAACY------
 A C G T A C G T C A T G C G A T A T G C C G T A A G T C A C G T A C T G C G T A G T C A A C G T A C T G A T G C C A G T A C T G G T A C G T C A
T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:5
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---GTCACTNAATGCTKCA
NANTTCATTGAATTA----
 A C G T A C G T A C G T C A T G C G A T A T G C C G T A A G T C A C G T A C T G C G T A G T C A A C G T A C T G A T G C C A G T A C T G G T A C G T C A
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GTCACTNAATGCTKCA
AAGCACTTAA-------
 A C G T C A T G C G A T A T G C C G T A A G T C A C G T A C T G C G T A G T C A A C G T A C T G A T G C C A G T A C T G G T A C G T C A
T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0132.1_Pax6/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GTCACTNAATGCTKCA
GNNAATTAATTAATCA
 C A T G C G A T A T G C C G T A A G T C A C G T A C T G C G T A G T C A A C G T A C T G A T G C C A G T A C T G G T A C G T C A
C A T G G C A T A T G C T G C A T G C A G A C T G C A T T C G A G C T A C G A T A C G T C G T A C T G A A C G T G A T C T C G A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GTCACTNAATGCTKCA-
-----TGAATTATGCAT
 C A T G C G A T A T G C C G T A A G T C A C G T A C T G C G T A G T C A A C G T A C T G A T G C C A G T A C T G G T A C G T C A A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

ISL2/MA0914.1/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GTCACTNAATGCTKCA
-GCACTTAA-------
 C A T G C G A T A T G C C G T A A G T C A C G T A C T G C G T A G T C A A C G T A C T G A T G C C A G T A C T G G T A C G T C A
A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GTCACTNAATGCTKCA
AASCACTCAA-------
 A C G T C A T G C G A T A T G C C G T A A G T C A C G T A C T G C G T A G T C A A C G T A C T G A T G C C A G T A C T G G T A C G T C A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T