Information for 24-GTGCMAAACRWGY (Motif 42)

A C T G A C G T A C T G A G T C G T C A G T C A C G T A C G T A A G T C C T G A C G A T A C T G A G T C
Reverse Opposite:
C T A G A G T C C G T A A G C T A C T G A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C
p-value:1e-6
log p-value:-1.428e+01
Information Content per bp:1.876
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.6 +/- 29.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GTGCMAAACRWGY
GGTGCCAAGT----
 A C G T A C T G A C G T A C T G A G T C G T C A G T C A C G T A C G T A A G T C C T G A C G A T A C T G A G T C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTGCMAAACRWGY
AGGTGHCAGACA---
 A C G T A C G T A C T G A C G T A C T G A G T C G T C A G T C A C G T A C G T A A G T C C T G A C G A T A C T G A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTGCMAAACRWGY
CGTGCCAAG-----
 A C G T A C T G A C G T A C T G A G T C G T C A G T C A C G T A C G T A A G T C C T G A C G A T A C T G A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GTGCMAAACRWGY
ATGCCAACC----
 A C T G A C G T A C T G A G T C G T C A G T C A C G T A C G T A A G T C C T G A C G A T A C T G A G T C
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GTGCMAAACRWGY
AGGTGNCAGACAG--
 A C G T A C G T A C T G A C G T A C T G A G T C G T C A G T C A C G T A C G T A A G T C C T G A C G A T A C T G A G T C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTGCMAAACRWGY
-TGCCAA------
 A C T G A C G T A C T G A G T C G T C A G T C A C G T A C G T A A G T C C T G A C G A T A C T G A G T C
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GTGCMAAACRWGY
ACTATGCCAACCTACC
 A C G T A C G T A C G T A C T G A C G T A C T G A G T C G T C A G T C A C G T A C G T A A G T C C T G A C G A T A C T G A G T C
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GTGCMAAACRWGY
TTGCCAAG-----
 A C T G A C G T A C T G A G T C G T C A G T C A C G T A C G T A A G T C C T G A C G A T A C T G A G T C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GTGCMAAACRWGY
CAATTGCAAAAATAT-
 A C G T A C G T A C G T A C T G A C G T A C T G A G T C G T C A G T C A C G T A C G T A A G T C C T G A C G A T A C T G A G T C
G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GTGCMAAACRWGY--
AACACCAAAACAAAGGA
 A C G T A C G T A C T G A C G T A C T G A G T C G T C A G T C A C G T A C G T A A G T C C T G A C G A T A C T G A G T C A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A