Information for 19-CRGCMGCYCTGSMGAM (Motif 24)

A G T C C T A G C T A G A T G C G T C A A C T G A G T C A G C T A G T C C G A T A C T G A T C G T G C A A C T G C G T A G T C A
Reverse Opposite:
A C G T A C G T A G T C A C G T A T G C A G T C C G T A A C T G C T G A A C T G A G T C A C G T A T C G A G T C A G T C A C T G
p-value:1e-9
log p-value:-2.215e+01
Information Content per bp:1.844
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.6 +/- 24.0bp
Average Position of motif in Background26.3 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:1
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CRGCMGCYCTGSMGAM
CGGTTGCCATGGCAAC
 A G T C C T A G C T A G A T G C G T C A A C T G A G T C A G C T A G T C C G A T A C T G A T C G T G C A A C T G C G T A G T C A
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

PB0051.1_Osr2_1/Jaspar

Match Rank:2
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----CRGCMGCYCTGSMGAM
ATGTACAGTAGCAAAG-----
 A C G T A C G T A C G T A C G T A C G T A G T C C T A G C T A G A T G C G T C A A C T G A G T C A G C T A G T C C G A T A C T G A T C G T G C A A C T G C G T A G T C A
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G A C G T A C G T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CRGCMGCYCTGSMGAM
AGCAGCTGCTNN------
 A C G T A C G T A G T C C T A G C T A G A T G C G T C A A C T G A G T C A G C T A G T C C G A T A C T G A T C G T G C A A C T G C G T A G T C A
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CRGCMGCYCTGSMGAM
-NGTTGCCATGGCAA-
 A G T C C T A G C T A G A T G C G T C A A C T G A G T C A G C T A G T C C G A T A C T G A T C G T G C A A C T G C G T A G T C A
A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:CRGCMGCYCTGSMGAM
CAGCTGNT--------
 A G T C C T A G C T A G A T G C G T C A A C T G A G T C A G C T A G T C C G A T A C T G A T C G T G C A A C T G C G T A G T C A
G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:CRGCMGCYCTGSMGAM
--GTTGCCATGGNAAC
 A G T C C T A G C T A G A T G C G T C A A C T G A G T C A G C T A G T C C G A T A C T G A T C G T G C A A C T G C G T A G T C A
A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

Ascl2/MA0816.1/Jaspar

Match Rank:7
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CRGCMGCYCTGSMGAM
AGCAGCTGCT--------
 A C G T A C G T A G T C C T A G C T A G A T G C G T C A A C T G A G T C A G C T A G T C C G A T A C T G A T C G T G C A A C T G C G T A G T C A
T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:8
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----CRGCMGCYCTGSMGAM
CTCAGCAGCTGCTACTG----
 A C G T A C G T A C G T A C G T A C G T A G T C C T A G C T A G A T G C G T C A A C T G A G T C A G C T A G T C C G A T A C T G A T C G T G C A A C T G C G T A G T C A
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-CRGCMGCYCTGSMGAM
NCAGCTGCTG-------
 A C G T A G T C C T A G C T A G A T G C G T C A A C T G A G T C A G C T A G T C C G A T A C T G A T C G T G C A A C T G C G T A G T C A
T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CRGCMGCYCTGSMGAM
-KGTTGCCATGGCAAC
 A G T C C T A G C T A G A T G C G T C A A C T G A G T C A G C T A G T C C G A T A C T G A T C G T G C A A C T G C G T A G T C A
A C G T A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C