Information for 16-TYCGGCAGGCCTRACT (Motif 17)

G A C T A G C T A T G C C A T G A C T G T A G C C G T A C T A G A C T G T A G C G T A C A C G T T C A G C T G A A G T C A C G T
Reverse Opposite:
C G T A T A C G A G C T A G T C C G T A A C T G A T C G G T A C A G T C C G A T A T C G G T A C G T A C T A C G C T G A C T G A
p-value:1e-11
log p-value:-2.560e+01
Information Content per bp:1.713
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets27.0 +/- 7.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TYCGGCAGGCCTRACT--
---GTCATGCHTGRCTGS
 G A C T A G C T A T G C C A T G A C T G T A G C C G T A C T A G A C T G T A G C G T A C A C G T T C A G C T G A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.61
Offset:6
Orientation:forward strand
Alignment:TYCGGCAGGCCTRACT
------AGGCCTNG--
 G A C T A G C T A T G C C A T G A C T G T A G C C G T A C T A G A C T G T A G C G T A C A C G T T C A G C T G A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G A C G T A C G T

PAX9/MA0781.1/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TYCGGCAGGCCTRACT---
--CGTCACGCATGACTGCA
 G A C T A G C T A T G C C A T G A C T G T A G C C G T A C T A G A C T G T A G C G T A C A C G T T C A G C T G A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PAX1/MA0779.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TYCGGCAGGCCTRACT---
--CGTCACGCATGACTGCA
 G A C T A G C T A T G C C A T G A C T G T A G C C G T A C T A G A C T G T A G C G T A C A C G T T C A G C T G A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:5
Score:0.57
Offset:6
Orientation:forward strand
Alignment:TYCGGCAGGCCTRACT
------AGGCCTAG--
 G A C T A G C T A T G C C A T G A C T G T A G C C G T A C T A G A C T G T A G C G T A C A C G T T C A G C T G A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TYCGGCAGGCCTRACT--
--NGTCACGCTTGGCTGC
 G A C T A G C T A T G C C A T G A C T G T A G C C G T A C T A G A C T G T A G C G T A C A C G T T C A G C T G A A G T C A C G T A C G T A C G T
A C G T A C G T C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

Zfx/MA0146.2/Jaspar

Match Rank:7
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:TYCGGCAGGCCTRACT---
-----CAGGCCNNGGCCNN
 G A C T A G C T A T G C C A T G A C T G T A G C C G T A C T A G A C T G T A G C G T A C A C G T T C A G C T G A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

PB0180.1_Sp4_2/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:TYCGGCAGGCCTRACT
NNGGCCACGCCTTTN-
 G A C T A G C T A T G C C A T G A C T G T A G C C G T A C T A G A C T G T A G C G T A C A C G T T C A G C T G A A G T C A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G A C G T

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-TYCGGCAGGCCTRACT
TNNGGGCAG--------
 A C G T G A C T A G C T A T G C C A T G A C T G T A G C C G T A C T A G A C T G T A G C G T A C A C G T T C A G C T G A A G T C A C G T
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:TYCGGCAGGCCTRACT
CTTGGCAA--------
 G A C T A G C T A T G C C A T G A C T G T A G C C G T A C T A G A C T G T A G C G T A C A C G T T C A G C T G A A G T C A C G T
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T