Information for 24-CAGCATAGGGCAGCAA (Motif 42)

A G T C C G T A A C T G A G T C G T C A A G C T C T G A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A C T G A
Reverse Opposite:
A G C T A C G T A C T G A G T C C G A T A C T G A G T C G T A C A G T C A G C T C T G A A C G T A C T G A G T C A C G T A C T G
p-value:1e-6
log p-value:-1.424e+01
Information Content per bp:1.851
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.0 +/- 30.1bp
Average Position of motif in Background27.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CAGCATAGGGCAGCAA--
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A G T C C G T A A C T G A G T C G T C A A G C T C T G A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A C T G A A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CAGCATAGGGCAGCAA
TGGCCACCAGGGGGCGCTA-
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C G T C A A G C T C T G A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A C T G A
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CAGCATAGGGCAGCAA
-NGCCTNAGGCN----
 A G T C C G T A A C T G A G T C G T C A A G C T C T G A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A C T G A
A C G T G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CAGCATAGGGCAGCAA
-NGCCTGAGGCN----
 A G T C C G T A A C T G A G T C G T C A A G C T C T G A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A C T G A
A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G A C G T A C G T A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CAGCATAGGGCAGCAA
-TGCCTGAGGCN----
 A G T C C G T A A C T G A G T C G T C A A G C T C T G A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A C T G A
A C G T G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:6
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CAGCATAGGGCAGCAA
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A G T C G T C A A G C T C T G A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A C T G A
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CAGCATAGGGCAGCAA
DCHCAGCAGGRGGCC----
 A C G T A C G T A C G T A G T C C G T A A C T G A G T C G T C A A G C T C T G A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A C T G A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CAGCATAGGGCAGCAA
---CAAAGGTCAG---
 A G T C C G T A A C T G A G T C G T C A A G C T C T G A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A C T G A
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CAGCATAGGGCAGCAA
CACAGCAGGGGG------
 A C G T A C G T A G T C C G T A A C T G A G T C G T C A A G C T C T G A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A C T G A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CAGCATAGGGCAGCAA
CAGCC-----------
 A G T C C G T A A C T G A G T C G T C A A G C T C T G A A C T G A C T G A C T G A G T C C G T A A C T G G T A C C G T A C T G A
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T