Information for 3-GCCACYAGAGGGC (Motif 4)

C T A G A G T C A G T C C G T A T A G C G A C T C T G A A C T G C T G A A C T G A C T G A C T G A G T C
Reverse Opposite:
A C T G G T A C A G T C G T A C A G C T A G T C A G C T C T G A A C T G G A C T A C T G C T A G G A T C
p-value:1e-19
log p-value:-4.476e+01
Information Content per bp:1.798
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.65%
Number of Background Sequences with motif59.8
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets55.5 +/- 27.7bp
Average Position of motif in Background49.7 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:GCCACYAGAGGGC-------
GCCASCAGGGGGCGCYVNNG
 C T A G A G T C A G T C C G T A T A G C G A C T C T G A A C T G C T G A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--GCCACYAGAGGGC-----
TGGCCACCAGGTGGCACTNT
 A C G T A C G T C T A G A G T C A G T C C G T A T A G C G A C T C T G A A C T G C T G A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--GCCACYAGAGGGC----
TGGCCACCAGGGGGCGCTA
 A C G T A C G T C T A G A G T C A G T C C G T A T A G C G A C T C T G A A C T G C T G A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCCACYAGAGGGC--
-TCACCTCTGGGCAG
 C T A G A G T C A G T C C G T A T A G C G A C T C T G A A C T G C T G A A C T G A C T G A C T G A G T C A C G T A C G T
A C G T G A C T G T A C C T G A A G T C G A T C A G C T A T G C G C A T C T A G C T A G C A T G A G T C C G T A A C T G

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCCACYAGAGGGC------
--NNNAAGGGGGCGGGNNN
 C T A G A G T C A G T C C G T A T A G C G A C T C T G A A C T G C T G A A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCCACYAGAGGGC
---AACAGATGGC
 C T A G A G T C A G T C C G T A T A G C G A C T C T G A A C T G C T G A A C T G A C T G A C T G A G T C
A C G T A C G T A C G T C T G A T C G A A G T C G T C A A C T G T G C A G C A T A C T G A C T G A G T C

PB0101.1_Zic1_1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCCACYAGAGGGC
CACCCCCGGGGGGG
 A C G T C T A G A G T C A G T C C G T A T A G C G A C T C T G A A C T G C T G A A C T G A C T G A C T G A G T C
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G

Rarg(var.2)/MA0860.1/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCCACYAGAGGGC-
AAGGTCACGAAAGGTCA
 A C G T A C G T A C G T C T A G A G T C A G T C C G T A T A G C G A C T C T G A A C T G C T G A A C T G A C T G A C T G A G T C A C G T
C T G A T C G A A T C G A C T G A C G T G T A C T C G A G T A C A T C G T C G A T C G A T C G A A C T G A C T G G C A T G A T C T C G A

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCCACYAGAGGGC-
GGTCANYTGAGGWCA
 A C G T C T A G A G T C A G T C C G T A T A G C G A C T C T G A A C T G C T G A A C T G A C T G A C T G A G T C A C G T
C T A G C A T G A C G T A G T C G C T A A G C T A G T C A G C T T C A G C T G A A C T G C A T G G C A T A T G C C G T A

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GCCACYAGAGGGC--
-CCGCCCAAGGGCAG
 C T A G A G T C A G T C C G T A T A G C G A C T C T G A A C T G C T G A A C T G A C T G A C T G A G T C A C G T A C G T
A C G T A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G