Information for 19-TGTTTGHCAGGAG (Motif 35)

A C G T A C T G A C G T A G C T A C G T A C T G G C T A G T A C G T C A A T C G A C T G T C G A C A T G
Reverse Opposite:
G T A C A C G T G T A C A T G C A C G T A C T G C G A T A G T C C G T A C T G A C G T A G T A C C G T A
p-value:1e-8
log p-value:-1.916e+01
Information Content per bp:1.723
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif45.6
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets40.6 +/- 27.9bp
Average Position of motif in Background48.9 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-TGTTTGHCAGGAG
NTGATTGACAGN--
 A C G T A C G T A C T G A C G T A G C T A C G T A C T G G C T A G T A C G T C A A T C G A C T G T C G A C A T G
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-TGTTTGHCAGGAG
BTGABTGACAGS--
 A C G T A C G T A C T G A C G T A G C T A C G T A C T G G C T A G T A C G T C A A T C G A C T G T C G A C A T G
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:3
Score:0.73
Offset:3
Orientation:forward strand
Alignment:TGTTTGHCAGGAG
---TTGACAGC--
 A C G T A C T G A C G T A G C T A C G T A C T G G C T A G T A C G T C A A T C G A C T G T C G A C A T G
A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TGTTTGHCAGGAG
TGAGTGACAGSC-
 A C G T A C T G A C G T A G C T A C G T A C T G G C T A G T A C G T C A A T C G A C T G T C G A C A T G
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:5
Score:0.70
Offset:3
Orientation:forward strand
Alignment:TGTTTGHCAGGAG
---TTGACAGG--
 A C G T A C T G A C G T A G C T A C G T A C T G G C T A G T A C G T C A A T C G A C T G T C G A C A T G
A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TGTTTGHCAGGAG
---YTGWCADY--
 A C G T A C T G A C G T A G C T A C G T A C T G G C T A G T A C G T C A A T C G A C T G T C G A C A T G
A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C A C G T A C G T

PH0105.1_Meis3/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TGTTTGHCAGGAG---
GTATTGACAGGTNNTT
 A C G T A C T G A C G T A G C T A C G T A C T G G C T A G T A C G T C A A T C G A C T G T C G A C A T G A C G T A C G T A C G T
C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TGTTTGHCAGGAG
---TTGACAG---
 A C G T A C T G A C G T A G C T A C G T A C T G G C T A G T A C G T C A A T C G A C T G T C G A C A T G
A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TGTTTGHCAGGAG
--VBTGWCAGCB-
 A C G T A C T G A C G T A G C T A C G T A C T G G C T A G T A C G T C A A T C G A C T G T C G A C A T G
A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TGTTTGHCAGGAG
---TTGCCAAG--
 A C G T A C T G A C G T A G C T A C G T A C T G G C T A G T A C G T C A A T C G A C T G T C G A C A T G
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T