Information for 17-KGTCCAATTGGACCTA (Motif 25)

A C G T C T A G A C G T A G T C A G T C C G T A G T C A A C G T A G C T A C T G A T C G C T G A A G T C T G A C C A G T T C G A
Reverse Opposite:
A G C T G T C A A C T G A C T G A G C T A T G C G T A C C T G A G T C A A C G T A C G T C T A G A C T G G T C A A G T C T G A C
p-value:1e-9
log p-value:-2.207e+01
Information Content per bp:1.742
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.3 +/- 24.9bp
Average Position of motif in Background53.8 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:KGTCCAATTGGACCTA
-AGCCAATCGG-----
 A C G T C T A G A C G T A G T C A G T C C G T A G T C A A C G T A G C T A C T G A T C G C T G A A G T C T G A C C A G T T C G A
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T A C G T

PH0089.1_Isx/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-KGTCCAATTGGACCTA
ACTCCTAATTAGTCGT-
 A C G T A C G T C T A G A C G T A G T C A G T C C G T A G T C A A C G T A G C T A C T G A T C G C T G A A G T C T G A C C A G T T C G A
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----KGTCCAATTGGACCTA
AAATGGACCAATCAG-----
 A C G T A C G T A C G T A C G T A C G T C T A G A C G T A G T C A G T C C G T A G T C A A C G T A G C T A C T G A T C G C T G A A G T C T G A C C A G T T C G A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T A C G T A C G T

PH0107.1_Msx2/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-KGTCCAATTGGACCTA
ANCGCTAATTGGTCTNN
 A C G T A C G T C T A G A C G T A G T C A G T C C G T A G T C A A C G T A G C T A C T G A T C G C T G A A G T C T G A C C A G T T C G A
T C G A C T A G G T A C C T A G G T A C G A C T C G T A C G T A A C G T C G A T C T A G T A C G G A C T A T G C G A C T A C G T A G T C

PH0127.1_Nobox/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--KGTCCAATTGGACCTA
GNTNNCTAATTAGNNCG-
 A C G T A C G T A C G T C T A G A C G T A G T C A G T C C G T A G T C A A C G T A G C T A C T G A T C G C T G A A G T C T G A C C A G T T C G A
T A C G C T G A C G A T C G T A T G A C A G T C G A C T C T G A C G T A G C A T A G C T C T G A T C A G A G T C A T C G T A G C A T C G A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:6
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--KGTCCAATTGGACCTA
ACTAGCCAATCA------
 A C G T A C G T A C G T C T A G A C G T A G T C A G T C C G T A G T C A A C G T A G C T A C T G A T C G C T G A A G T C T G A C C A G T T C G A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T A C G T

ESR2/MA0258.2/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:KGTCCAATTGGACCTA
AGGNCANNGTGACCT-
 A C G T C T A G A C G T A G T C A G T C C G T A G T C A A C G T A G C T A C T G A T C G C T G A A G T C T G A C C A G T T C G A
C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--KGTCCAATTGGACCTA
NNTNNACAATGGGANNN-
 A C G T A C G T A C G T C T A G A C G T A G T C A G T C C G T A G T C A A C G T A G C T A C T G A T C G C T G A A G T C T G A C C A G T T C G A
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:KGTCCAATTGGACCTA
-GGTCANNGTGACCTN
 A C G T C T A G A C G T A G T C A G T C C G T A G T C A A C G T A G C T A C T G A T C G C T G A A G T C T G A C C A G T T C G A
A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:KGTCCAATTGGACCTA
---NTAATTGG-----
 A C G T C T A G A C G T A G T C A G T C C G T A G T C A A C G T A G C T A C T G A T C G C T G A A G T C T G A C C A G T T C G A
A C G T A C G T A C G T A G T C A C G T T G C A G T C A A C G T A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T