Information for 11-AAGCCAAGCGTCC (Motif 19)

C G T A C G T A A C T G A G T C A G T C G T C A C G T A A C T G A G T C A C T G A G C T A T G C A G T C
Reverse Opposite:
A C T G A T C G C T G A A G T C A C T G A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C G T
p-value:1e-10
log p-value:-2.499e+01
Information Content per bp:1.914
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets42.2 +/- 20.2bp
Average Position of motif in Background51.4 +/- 17.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SP4/MA0685.1/Jaspar

Match Rank:1
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAGCCAAGCGTCC---
TAAGCCACGCCCCCTTT
 A C G T C G T A C G T A A C T G A G T C A G T C G T C A C G T A A C T G A G T C A C T G A G C T A T G C A G T C A C G T A C G T A C G T
A G C T G C T A C T G A C T A G G T A C A G T C T G C A G T A C A C T G T A G C T G A C A G T C G T A C G A T C G C A T G A C T G A C T

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AAGCCAAGCGTCC
-TGCCAA------
 C G T A C G T A A C T G A G T C A G T C G T C A C G T A A C T G A G T C A C T G A G C T A T G C A G T C
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AAGCCAAGCGTCC
CGTGCCAAG-----
 A C G T C G T A C G T A A C T G A G T C A G T C G T C A C G T A A C T G A G T C A C T G A G C T A T G C A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAGCCAAGCGTCC
AAGGCAAGTGT--
 C G T A C G T A A C T G A G T C A G T C G T C A C G T A A C T G A G T C A C T G A G C T A T G C A G T C
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

Nr2e1/MA0676.1/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AAGCCAAGCGTCC
AAAAGTCAA------
 A C G T A C G T C G T A C G T A A C T G A G T C A G T C G T C A C G T A A C T G A G T C A C T G A G C T A T G C A G T C
G C T A C T G A C T G A C T G A C T A G A G C T A G T C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Pax6/MA0069.1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:AAGCCAAGCGTCC-
AANTCATGCGTGAA
 C G T A C G T A A C T G A G T C A G T C G T C A C G T A A C T G A G T C A C T G A G C T A T G C A G T C A C G T
G T C A T C G A A G T C G A C T A T G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A T C G A

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-AAGCCAAGCGTCC--
GCAGCCAAGCGTGACN
 A C G T C G T A C G T A A C T G A G T C A G T C G T C A C G T A A C T G A G T C A C T G A G C T A T G C A G T C A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AAGCCAAGCGTCC-
SCAGYCADGCATGAC
 A C G T C G T A C G T A A C T G A G T C A G T C G T C A C G T A A C T G A G T C A C T G A G C T A T G C A G T C A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Hes1/MA1099.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AAGCCAAGCGTCC
--GGCACGCGTC-
 C G T A C G T A A C T G A G T C A G T C G T C A C G T A A C T G A G T C A C T G A G C T A T G C A G T C
A C G T A C G T T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T

PB0147.1_Max_2/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AAGCCAAGCGTCC-
GTGCCACGCGACTG
 C G T A C G T A A C T G A G T C A G T C G T C A C G T A A C T G A G T C A C T G A G C T A T G C A G T C A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G