Information for 4-WCTTGACCCACAKTKG (Motif 4)

G C A T T G A C C G A T G C A T C T A G C T G A A T G C T A G C G A T C C G T A G T A C T C G A C A G T A C G T C A T G C T A G
Reverse Opposite:
A G T C G T A C G T C A G T C A A G C T A C T G C G A T C T A G A T C G A T C G A G C T G A T C C G T A C G T A A C T G C G T A
p-value:1e-14
log p-value:-3.269e+01
Information Content per bp:1.696
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.3 +/- 31.6bp
Average Position of motif in Background34.8 +/- 4.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:WCTTGACCCACAKTKG
--TTGACCTANTTATN
 G C A T T G A C C G A T G C A T C T A G C T G A A T G C T A G C G A T C C G T A G T A C T C G A C A G T A C G T C A T G C T A G
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:WCTTGACCCACAKTKG
---TGACCTARTT---
 G C A T T G A C C G A T G C A T C T A G C T G A A T G C T A G C G A T C C G T A G T A C T C G A C A G T A C G T C A T G C T A G
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:3
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---WCTTGACCCACAKTKG
TGACCTTGACCT-------
 A C G T A C G T A C G T G C A T T G A C C G A T G C A T C T A G C T G A A T G C T A G C G A T C C G T A G T A C T C G A C A G T A C G T C A T G C T A G
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---WCTTGACCCACAKTKG
NGNTCTAGAACCNGV----
 A C G T A C G T A C G T G C A T T G A C C G A T G C A T C T A G C T G A A T G C T A G C G A T C C G T A G T A C T C G A C A G T A C G T C A T G C T A G
C T G A T C A G G C T A A G C T A G T C G A C T C T G A C T A G T G C A C T G A A G T C G T A C G A T C A C T G T C G A A C G T A C G T A C G T A C G T

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:5
Score:0.49
Offset:3
Orientation:forward strand
Alignment:WCTTGACCCACAKTKG------
---TGACCTAAAGTAACCTCTG
 G C A T T G A C C G A T G C A T C T A G C T G A A T G C T A G C G A T C C G T A G T A C T C G A C A G T A C G T C A T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T T C A G G T C A G T A C G A T C A G C T T C G A C T G A C T G A C T A G C G A T C T G A T C G A G T A C G T A C A G C T A G T C C A G T A C T G

PB0157.1_Rara_2/Jaspar

Match Rank:6
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-WCTTGACCCACAKTKG
NNCNTGACCCCGCTCT-
 A C G T G C A T T G A C C G A T G C A T C T A G C T G A A T G C T A G C G A T C C G T A G T A C T C G A C A G T A C G T C A T G C T A G
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:7
Score:0.49
Offset:0
Orientation:forward strand
Alignment:WCTTGACCCACAKTKG-
AGGAGACCCCCAATTTG
 G C A T T G A C C G A T G C A T C T A G C T G A A T G C T A G C G A T C C G T A G T A C T C G A C A G T A C G T C A T G C T A G A C G T
C G T A C A T G C A T G C G T A C A T G C T G A T G A C G T A C T A G C A G T C G T A C G C T A G C T A C G A T C G A T C G A T T C A G

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.48
Offset:3
Orientation:reverse strand
Alignment:WCTTGACCCACAKTKG
---TGACCT-------
 G C A T T G A C C G A T G C A T C T A G C T G A A T G C T A G C G A T C C G T A G T A C T C G A C A G T A C G T C A T G C T A G
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:9
Score:0.47
Offset:3
Orientation:reverse strand
Alignment:WCTTGACCCACAKTKG
---TGACCTTGAT---
 G C A T T G A C C G A T G C A T C T A G C T G A A T G C T A G C G A T C C G T A G T A C T C G A C A G T A C G T C A T G C T A G
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:10
Score:0.47
Offset:-2
Orientation:reverse strand
Alignment:--WCTTGACCCACAKTKG
NNANTTGACCCCTNNNN-
 A C G T A C G T G C A T T G A C C G A T G C A T C T A G C T G A A T G C T A G C G A T C C G T A G T A C T C G A C A G T A C G T C A T G C T A G
A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G A C G T