Information for 10-GAATGGTTGA (Motif 18)

A C T G C T G A C G T A A C G T A C T G A C T G A C G T A C G T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A C G T A A G T C A G T C C G T A A C G T A G C T A G T C
p-value:1e-6
log p-value:-1.418e+01
Information Content per bp:1.957
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.2 +/- 19.2bp
Average Position of motif in Background42.9 +/- 16.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1/MA0070.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GAATGGTTGA---
-TTTGATTGATGN
 A C T G C T G A C G T A A C G T A C T G A C T G A C G T A C G T A C T G C G T A A C G T A C G T A C G T
A C G T C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

PB0144.1_Lef1_2/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAATGGTTGA-----
NNANTGATTGATNTTN
 A C G T A C T G C T G A C G T A A C G T A C T G A C T G A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAATGGTTGA-----
NNANTGATTGATNNNN
 A C G T A C T G C T G A C G T A A C G T A C T G A C T G A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T G C A T A C G G A C T C T A G G T C A G A C T C G A T T C A G C G T A C G A T A T G C A G C T G A C T A T G C

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAATGGTTGA-
TGATTGGCTANN
 A C G T A C T G C T G A C G T A A C G T A C T G A C T G A C G T A C G T A C T G C G T A A C G T
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GAATGGTTGA
--TTGATTGN
 A C T G C T G A C G T A A C G T A C T G A C T G A C G T A C G T A C T G C G T A
A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G

Sox5/MA0087.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAATGGTTGA
--ATTGTTA-
 A C T G C T G A C G T A A C G T A C T G A C T G A C G T A C G T A C T G C G T A
A C G T A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GAATGGTTGA----
--ATGATKGATGRC
 A C T G C T G A C G T A A C G T A C T G A C T G A C G T A C G T A C T G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PB0028.1_Hbp1_1/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GAATGGTTGA-
ACTATGAATGAATGAT
 A C G T A C G T A C G T A C G T A C G T A C T G C T G A C G T A A C G T A C T G A C T G A C G T A C G T A C T G C G T A A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

PB0175.1_Sox4_2/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GAATGGTTGA---
GGAAAAATTGTTAGGAA
 A C G T A C G T A C G T A C G T A C T G C T G A C G T A A C G T A C T G A C T G A C G T A C G T A C T G C G T A A C G T A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GAATGGTTGA---
CTGATTGGTCNATTT
 A C G T A C G T A C T G C T G A C G T A A C G T A C T G A C T G A C G T A C G T A C T G C G T A A C G T A C G T A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T