Information for 5-GAGGCCAAACGCTGGA (Motif 7)

A C T G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A G T A C A C T G A G T C A C G T A C T G C T A G G T C A
Reverse Opposite:
A C G T A G T C A G T C C G T A C T A G A G T C A C T G A C G T A G C T A C G T A C T G A C T G A G T C A G T C C G A T A G T C
p-value:1e-10
log p-value:-2.457e+01
Information Content per bp:1.925
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.2 +/- 25.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARA/MA0729.1/Jaspar

Match Rank:1
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAGGCCAAACGCTGGA--
GAGGTCAAAAGGTCAATG
 A C T G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A G T A C A C T G A G T C A C G T A C T G C T A G G T C A A C G T A C G T
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GAGGCCAAACGCTGGA
TRAGGTCA---------
 A C G T A C T G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A G T A C A C T G A G T C A C G T A C T G C T A G G T C A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:3
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GAGGCCAAACGCTGGA
CAAAGGTCAAGGG-----
 A C G T A C G T A C T G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A G T A C A C T G A G T C A C G T A C T G C T A G G T C A
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GAGGCCAAACGCTGGA
--TGCCAA--------
 A C T G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A G T A C A C T G A G T C A C G T A C T G C T A G G T C A
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAGGCCAAACGCTGGA
AAGGTCAAAAGGTCAA
 A C T G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A G T A C A C T G A G T C A C G T A C T G C T A G G T C A
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

PLAG1/MA0163.1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAGGCCAAACGCTGGA
GGGGCCCAAGGGGG--
 A C T G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A G T A C A C T G A G T C A C G T A C T G C T A G G T C A
A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G A C G T A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GAGGCCAAACGCTGGA
--GGCCACACCCAN--
 A C T G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A G T A C A C T G A G T C A C G T A C T G C T A G G T C A
A C G T A C G T C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGGCCAAACGCTGGA
CGTGCCAAG-------
 A C T G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A G T A C A C T G A G T C A C G T A C T G C T A G G T C A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGGCCAAACGCTGGA
GAGSCCGAGC------
 A C T G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A G T A C A C T G A G T C A C G T A C T G C T A G G T C A
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:10
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GAGGCCAAACGCTGGA
CTAGGCCT---------
 A C G T A C T G C G T A A C T G A C T G A G T C A G T C C G T A C T G A C G T A G T A C A C T G A G T C A C G T A C T G C T A G G T C A
T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T