Information for 13-CAGACTGCCACAT (Motif 13)

A G T C C G T A A C T G C G T A A G T C A C G T A C T G A G T C A G T C C G T A A G T C C G T A A C G T
Reverse Opposite:
C G T A A C G T A C T G A C G T A C T G A C T G A G T C C G T A A C T G A C G T A G T C A C G T A C T G
p-value:1e-8
log p-value:-1.900e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.45%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.8 +/- 14.8bp
Average Position of motif in Background46.8 +/- 7.3bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAGACTGCCACAT
CTGTCTGTCACCT
 A G T C C G T A A C T G C G T A A G T C A C G T A C T G A G T C A G T C C G T A A G T C C G T A A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CAGACTGCCACAT
-TGTCTGDCACCT
 A G T C C G T A A C T G C G T A A G T C A C G T A C T G A G T C A G T C C G T A A G T C C G T A A C G T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTGCCACAT
CCAGACRSVB----
 A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C T G A G T C A G T C C G T A A G T C C G T A A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAGACTGCCACAT
CCAACTGCCA---
 A G T C C G T A A C T G C G T A A G T C A C G T A C T G A G T C A G T C C G T A A G T C C G T A A C G T
A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTGCCACAT
CCAGACAG------
 A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C T G A G T C A G T C C G T A A G T C C G T A A C G T
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:6
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CAGACTGCCACAT
CGACCAACTGCCATGC
 A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C T G A G T C A G T C C G T A A G T C C G T A A C G T
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CAGACTGCCACAT
TGGCAGNCTGCCAG--
 A C G T A C G T A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C T G A G T C A G T C C G T A A G T C C G T A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CAGACTGCCACAT
BCAGACWA------
 A C G T A G T C C G T A A C T G C G T A A G T C A C G T A C T G A G T C A G T C C G T A A G T C C G T A A C G T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

CREB3L1/MA0839.1/Jaspar

Match Rank:9
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CAGACTGCCACAT-----
----ATGCCACGTCATCA
 A G T C C G T A A C T G C G T A A G T C A C G T A C T G A G T C A G T C C G T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A G A C T C T A G G T A C G A T C C T G A A T G C T C A G C G A T T G A C C T G A A G C T G A T C C T G A

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CAGACTGCCACAT
CCAACTGCCA---
 A G T C C G T A A C T G C G T A A G T C A C G T A C T G A G T C A G T C C G T A A G T C C G T A A C G T
A G T C G A T C C G T A C G T A A G T C A C G T A C T G G A T C G A T C C T G A A C G T A C G T A C G T