Information for 9-CCAGCCATCCTTG (Motif 11)

A T G C A G T C C G T A T A C G T A G C G T A C C G T A A C G T A G T C A G T C G A C T A C G T C T A G
Reverse Opposite:
A G T C T G C A C T G A C T A G A C T G T G C A C G A T A C T G A C T G A G T C A C G T A C T G A T C G
p-value:1e-11
log p-value:-2.579e+01
Information Content per bp:1.769
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.20%
Number of Background Sequences with motif19.3
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets55.7 +/- 24.1bp
Average Position of motif in Background45.2 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CCAGCCATCCTTG--
SCAGYCADGCATGAC
 A T G C A G T C C G T A T A C G T A G C G T A C C G T A A C G T A G T C A G T C G A C T A C G T C T A G A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCAGCCATCCTTG---
GCAGCCAAGCGTGACN
 A T G C A G T C C G T A T A C G T A G C G T A C C G T A A C G T A G T C A G T C G A C T A C G T C T A G A C G T A C G T A C G T
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

YY1/MA0095.2/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCAGCCATCCTTG
GCNGCCATCTTG-
 A T G C A G T C C G T A T A C G T A G C G T A C C G T A A C G T A G T C A G T C G A C T A C G T C T A G
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCAGCCATCCTTG
GCCGCCATCTTG-
 A T G C A G T C C G T A T A C G T A G C G T A C C G T A A C G T A G T C A G T C G A C T A C G T C T A G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCAGCCATCCTTG
BCAGACWA-----
 A T G C A G T C C G T A T A C G T A G C G T A C C G T A A C G T A G T C A G T C G A C T A C G T C T A G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CCAGCCATCCTTG
GYCATCMATCAT--
 A C G T A T G C A G T C C G T A T A C G T A G C G T A C C G T A A C G T A G T C A G T C G A C T A C G T C T A G
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:7
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CCAGCCATCCTTG--
GAGGGCAGCCAAGCGTGAC
 A C G T A C G T A C G T A C G T A T G C A G T C C G T A T A C G T A G C G T A C C G T A A C G T A G T C A G T C G A C T A C G T C T A G A C G T A C G T
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCAGCCATCCTTG
-CAGCC-------
 A T G C A G T C C G T A T A C G T A G C G T A C C G T A A C G T A G T C A G T C G A C T A C G T C T A G
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CCAGCCATCCTTG
CCAGACRSVB---
 A T G C A G T C C G T A T A C G T A G C G T A C C G T A A C G T A G T C A G T C G A C T A C G T C T A G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T

PAX9/MA0781.1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CCAGCCATCCTTG---
TGCAGTCATGCGTGACG
 A C G T A T G C A G T C C G T A T A C G T A G C G T A C C G T A A C G T A G T C A G T C G A C T A C G T C T A G A C G T A C G T A C G T
C A G T A C T G G T A C C T G A A T C G A G C T A T G C C T G A C G A T A T C G A G T C C T A G A C G T C T A G C G T A G T A C T A C G