Information for 8-CCGCTTGCCT (Motif 27)

A G T C A G T C A C T G A G T C A C G T A C G T A C T G A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G C T A G G T A C C G T A C G T A A C T G A G T C A C T G A C T G
p-value:1e-6
log p-value:-1.601e+01
Information Content per bp:1.935
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif8.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets36.4 +/- 25.1bp
Average Position of motif in Background66.0 +/- 23.6bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CCGCTTGCCT-
NNACTTGCCTT
 A G T C A G T C A C T G A G T C A C G T A C G T A C T G A G T C A G T C A C G T A C G T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCGCTTGCCT
ACCACTTGAA-
 A C G T A G T C A G T C A C T G A G T C A C G T A C G T A C T G A G T C A G T C A C G T
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CCGCTTGCCT--
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A G T C A G T C A C T G A G T C A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

POL001.1_MTE/Jaspar

Match Rank:4
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CCGCTTGCCT-----
NCGACCGCTCCGCTCGAAA
 A C G T A C G T A C G T A C G T A G T C A G T C A C T G A G T C A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T C A G A T G C C T A G C G T A A T G C A G T C A C T G G A C T A C G T A T G C A T G C A C T G A G T C A C G T A G T C A C T G C T G A C T G A T C G A

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:5
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCGCTTGCCT-------
TTTMCGCTTSABTGAACACN
 A C G T A C G T A C G T A G T C A G T C A C T G A G T C A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCGCTTGCCT
-NGCTN----
 A G T C A G T C A C T G A G T C A C G T A C G T A C T G A G T C A G T C A C G T
A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T

PB0147.1_Max_2/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCGCTTGCCT-
NNGTCGCGTGNCAC
 A C G T A C G T A C G T A G T C A G T C A C T G A G T C A C G T A C G T A C T G A G T C A G T C A C G T A C G T
G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CCGCTTGCCT
CCGATTGGCT
 A G T C A G T C A C T G A G T C A C G T A C G T A C T G A G T C A G T C A C G T
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CCGCTTGCCT-
-NCCTTATCTG
 A G T C A G T C A C T G A G T C A C G T A C G T A C T G A G T C A G T C A C G T A C G T
A C G T A G C T A G T C A T G C A C G T A C G T C G T A A C G T A G T C C G A T A T C G

Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCGCTTGCCT-
-NNCTTATCTN
 A G T C A G T C A C T G A G T C A C G T A C G T A C T G A G T C A G T C A C G T A C G T
A C G T A G C T A G T C A T G C A G C T A C G T C G T A A C G T A G T C C G A T A T G C