Information for 12-GCTTTCAAATAGHTDT (Motif 11)

A C T G A G T C A C G T A C G T A C G T A G T C C G T A C T G A C T G A A G C T C G T A C T A G G A C T C G A T C A T G C G A T
Reverse Opposite:
C G T A G A T C C G T A C G T A A G T C A C G T C T G A G A C T A G C T A C G T A C T G C G T A C G T A C G T A C T A G A G T C
p-value:1e-10
log p-value:-2.421e+01
Information Content per bp:1.781
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif7.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets42.4 +/- 25.2bp
Average Position of motif in Background64.3 +/- 17.7bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCTTTCAAATAGHTDT
CGGTTTCAAA-------
 A C G T A C T G A G T C A C G T A C G T A C G T A G T C C G T A C T G A C T G A A G C T C G T A C T A G G A C T C G A T C A T G C G A T
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCTTTCAAATAGHTDT
TGGTTTCAGT-------
 A C G T A C T G A G T C A C G T A C G T A C G T A G T C C G T A C T G A C T G A A G C T C G T A C T A G G A C T C G A T C A T G C G A T
G A C T C T A G T A C G C G A T G C A T A C G T T A G C T C G A A T C G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCTTTCAAATAGHTDT
CCTTTGATGT------
 A C T G A G T C A C G T A C G T A C G T A G T C C G T A C T G A C T G A A G C T C G T A C T A G G A C T C G A T C A T G C G A T
A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCTTTCAAATAGHTDT
GCTGTCAA--------
 A C T G A G T C A C G T A C G T A C G T A G T C C G T A C T G A C T G A A G C T C G T A C T A G G A C T C G A T C A T G C G A T
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCTTTCAAATAGHTDT
NANTTTCAAGTGGTTAN
 A C G T A C T G A G T C A C G T A C G T A C G T A G T C C G T A C T G A C T G A A G C T C G T A C T A G G A C T C G A T C A T G C G A T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

BCL6B/MA0731.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCTTTCAAATAGHTDT
TGCTTTCTAGGAATTCA
 A C G T A C T G A G T C A C G T A C G T A C G T A G T C C G T A C T G A C T G A A G C T C G T A C T A G G A C T C G A T C A T G C G A T
A G C T C T A G A G T C A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C T G C T G A C G T A A G C T A G C T T G A C T G C A

LIN54/MA0619.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCTTTCAAATAGHTDT
-NATTCAAAT------
 A C T G A G T C A C G T A C G T A C G T A G T C C G T A C T G A C T G A A G C T C G T A C T A G G A C T C G A T C A T G C G A T
A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCTTTCAAATAGHTDT
GACCACATTCATACAAT---
 A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C G T A G T C C G T A C T G A C T G A A G C T C G T A C T A G G A C T C G A T C A T G C G A T
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T A C G T A C G T A C G T

PH0170.1_Tgif2/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GCTTTCAAATAGHTDT
AACTAGCTGTCAATAC-----
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A C G T A C G T A G T C C G T A C T G A C T G A A G C T C G T A C T A G G A C T C G A T C A T G C G A T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C A C G T A C G T A C G T A C G T A C G T

Bcl6/MA0463.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCTTTCAAATAGHTDT
NGCTTTCTAGGAAN---
 A C G T A C T G A G T C A C G T A C G T A C G T A G T C C G T A C T G A C T G A A G C T C G T A C T A G G A C T C G A T C A T G C G A T
C G A T C A T G G T A C G A C T A G C T G A C T A G T C A G C T C G T A C T A G C A T G T C G A G C T A G T C A A C G T A C G T A C G T