Information for 6-GCTTTACGGC (Motif 7)

A T C G A G T C A C G T A G C T A C G T T G C A A T G C A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A T C G A C G T G T C A C T G A C G T A A C T G A T G C
p-value:1e-15
log p-value:-3.678e+01
Information Content per bp:1.898
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif25.1
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets46.6 +/- 27.8bp
Average Position of motif in Background44.5 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GCTTTACGGC-
DGWTTTATGRCN
 A C G T A T C G A G T C A C G T A G C T A C G T T G C A A T G C A C T G A C T G A G T C A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

PH0065.1_Hoxc10/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCTTTACGGC----
ANNTTTTACGACNTNN
 A C G T A C G T A T C G A G T C A C G T A G C T A C G T T G C A A T G C A C T G A C T G A G T C A C G T A C G T A C G T A C G T
T G C A T A G C C T A G G C A T C A G T C G A T C G A T C G T A A G T C A C T G C T G A A G T C G A C T G C A T G C A T C G T A

PH0066.1_Hoxc11/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GCTTTACGGC----
NNNTTTTACGACNTTN
 A C G T A C G T A T C G A G T C A C G T A G C T A C G T T G C A A T G C A C T G A C T G A G T C A C G T A C G T A C G T A C G T
G T A C G A C T C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C T G A

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GCTTTACGGC----
NNGTTTTACGACTTTA
 A C G T A C G T A T C G A G T C A C G T A G C T A C G T T G C A A T G C A C T G A C T G A G T C A C G T A C G T A C G T A C G T
G T C A G A C T C T A G C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C G A C T C G A T G A C T C G T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCTTTACGGC-
TGATTTATGGCC
 A C G T A T C G A G T C A C G T A G C T A C G T T G C A A T G C A C T G A C T G A G T C A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Hoxc9/MA0485.1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCTTTACGGC-
NTGATTTATGGCC
 A C G T A C G T A T C G A G T C A C G T A G C T A C G T T G C A A T G C A C T G A C T G A G T C A C G T
T C A G C G A T C T A G C G T A A C G T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PH0077.1_Hoxd12/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GCTTTACGGC----
NNNATTTTACGACNNTN
 A C G T A C G T A C G T A T C G A G T C A C G T A G C T A C G T T G C A A T G C A C T G A C T G A G T C A C G T A C G T A C G T A C G T
G T C A C G T A C T A G C T G A C G A T C G A T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T A G

HOXD12/MA0873.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCTTTACGGC-
NTTTTACGACT
 A T C G A G T C A C G T A G C T A C G T T G C A A T G C A C T G A C T G A G T C A C G T
C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T

PH0067.1_Hoxc12/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GCTTTACGGC----
GNNNTTTTACGACCTNA
 A C G T A C G T A C G T A T C G A G T C A C G T A G C T A C G T T G C A A T G C A C T G A C T G A G T C A C G T A C G T A C G T A C G T
C T A G G C T A T C G A C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C A G C T C G T A C T G A

HOXC12/MA0906.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCTTTACGGC-
NTTTTACGACC
 A T C G A G T C A C G T A G C T A C G T T G C A A T G C A C T G A C T G A G T C A C G T
C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C