Information for 10-CCAGCAGCCAATC (Motif 12)

A G T C G A T C C T G A A T C G G T A C C G T A A C T G A G T C G T A C C G T A T C G A A C G T A G T C
Reverse Opposite:
A C T G C G T A A G C T C G A T A C T G C T A G A G T C G A C T A C T G A T G C A G C T C A T G C T A G
p-value:1e-11
log p-value:-2.673e+01
Information Content per bp:1.774
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif53.9
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets47.7 +/- 23.2bp
Average Position of motif in Background47.2 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CCAGCAGCCAATC-
--ACTAGCCAATCA
 A G T C G A T C C T G A A T C G G T A C C G T A A C T G A G T C G T A C C G T A T C G A A C G T A G T C A C G T
A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.66
Offset:5
Orientation:forward strand
Alignment:CCAGCAGCCAATC--
-----AGCCAATCGG
 A G T C G A T C C T G A A T C G G T A C C G T A A C T G A G T C G T A C C G T A T C G A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:CCAGCAGCCAATC
-----TGCCAA--
 A G T C G A T C C T G A A T C G G T A C C G T A A C T G A G T C G T A C C G T A T C G A A C G T A G T C
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCAGCAGCCAATC
---BCAGACWA--
 A G T C G A T C C T G A A T C G G T A C C G T A A C T G A G T C G T A C C G T A T C G A A C G T A G T C
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CCAGCAGCCAATC--
---SCTGTCAVTCAV
 A G T C G A T C C T G A A T C G G T A C C G T A A C T G A G T C G T A C C G T A T C G A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CCAGCAGCCAATC--
---NCTGTCAATCAN
 A G T C G A T C C T G A A T C G G T A C C G T A A C T G A G T C G T A C C G T A T C G A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CCAGCAGCCAATC
---CGTGCCAAG-
 A G T C G A T C C T G A A T C G G T A C C G T A A C T G A G T C G T A C C G T A T C G A A C G T A G T C
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCAGCAGCCAATC-----
---SCAGYCADGCATGAC
 A G T C G A T C C T G A A T C G G T A C C G T A A C T G A G T C G T A C C G T A T C G A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

NFYB/MA0502.1/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCAGCAGCCAATC--
AAATGGACCAATCAG
 A G T C G A T C C T G A A T C G G T A C C G T A A C T G A G T C G T A C C G T A T C G A A C G T A G T C A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

PH0170.1_Tgif2/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCAGCAGCCAATC-
AACTAGCTGTCAATAC
 A C G T A C G T A G T C G A T C C T G A A T C G G T A C C G T A A C T G A G T C G T A C C G T A T C G A A C G T A G T C A C G T
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C