Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 780)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46581)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-74	-1.705e+02	0.0000	76.0	9.74%	200.3	0.43%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-61	-1.423e+02	0.0000	149.0	19.10%	1647.5	3.57%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-61	-1.411e+02	0.0000	191.0	24.49%	2800.3	6.07%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-60	-1.404e+02	0.0000	157.0	20.13%	1873.1	4.06%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-60	-1.389e+02	0.0000	126.0	16.15%	1161.0	2.52%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-57	-1.329e+02	0.0000	118.0	15.13%	1054.7	2.29%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-55	-1.274e+02	0.0000	82.0	10.51%	449.4	0.97%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-52	-1.210e+02	0.0000	91.0	11.67%	640.1	1.39%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-48	-1.118e+02	0.0000	109.0	13.97%	1091.4	2.36%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-47	-1.096e+02	0.0000	67.0	8.59%	335.5	0.73%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-47	-1.088e+02	0.0000	109.0	13.97%	1127.3	2.44%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-46	-1.080e+02	0.0000	117.0	15.00%	1326.4	2.87%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-45	-1.051e+02	0.0000	115.0	14.74%	1316.4	2.85%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-45	-1.051e+02	0.0000	99.0	12.69%	947.3	2.05%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-41	-9.607e+01	0.0000	121.0	15.51%	1607.8	3.48%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-38	-8.980e+01	0.0000	98.0	12.56%	1113.3	2.41%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-38	-8.763e+01	0.0000	116.0	14.87%	1614.5	3.50%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-37	-8.557e+01	0.0000	82.0	10.51%	798.4	1.73%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-36	-8.497e+01	0.0000	49.0	6.28%	221.4	0.48%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-33	-7.803e+01	0.0000	73.0	9.36%	689.1	1.49%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-27	-6.414e+01	0.0000	52.0	6.67%	407.5	0.88%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-20	-4.791e+01	0.0000	96.0	12.31%	1870.9	4.05%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-20	-4.741e+01	0.0000	32.0	4.10%	193.6	0.42%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-17	-4.124e+01	0.0000	45.0	5.77%	514.0	1.11%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-17	-4.097e+01	0.0000	108.0	13.85%	2515.1	5.45%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-16	-3.717e+01	0.0000	117.0	15.00%	3009.1	6.52%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-15	-3.625e+01	0.0000	47.0	6.03%	641.7	1.39%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-15	-3.458e+01	0.0000	96.0	12.31%	2301.6	4.99%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-14	-3.299e+01	0.0000	53.0	6.79%	875.1	1.90%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-13	-3.205e+01	0.0000	123.0	15.77%	3487.3	7.56%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-13	-3.183e+01	0.0000	65.0	8.33%	1285.7	2.79%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-13	-3.109e+01	0.0000	20.0	2.56%	115.5	0.25%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-13	-3.101e+01	0.0000	82.0	10.51%	1911.1	4.14%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-13	-3.072e+01	0.0000	59.0	7.56%	1118.3	2.42%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-13	-3.063e+01	0.0000	34.0	4.36%	400.9	0.87%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-11	-2.603e+01	0.0000	65.0	8.33%	1468.8	3.18%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-10	-2.523e+01	0.0000	63.0	8.08%	1424.5	3.09%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-10	-2.518e+01	0.0000	80.0	10.26%	2066.1	4.48%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-10	-2.504e+01	0.0000	16.0	2.05%	93.2	0.20%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-10	-2.497e+01	0.0000	120.0	15.38%	3744.6	8.11%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-10	-2.467e+01	0.0000	96.0	12.31%	2736.0	5.93%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-10	-2.448e+01	0.0000	94.0	12.05%	2662.6	5.77%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-10	-2.417e+01	0.0000	40.0	5.13%	684.0	1.48%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-10	-2.331e+01	0.0000	58.0	7.44%	1311.6	2.84%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-9	-2.235e+01	0.0000	54.0	6.92%	1201.4	2.60%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-9	-2.082e+01	0.0000	37.0	4.74%	673.1	1.46%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-8	-2.055e+01	0.0000	57.0	7.31%	1376.8	2.98%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-8	-2.047e+01	0.0000	33.0	4.23%	558.5	1.21%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-8	-1.909e+01	0.0000	26.0	3.33%	384.4	0.83%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-8	-1.880e+01	0.0000	59.0	7.56%	1524.3	3.30%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-8	-1.878e+01	0.0000	14.0	1.79%	107.0	0.23%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-7	-1.707e+01	0.0000	35.0	4.49%	711.2	1.54%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-7	-1.650e+01	0.0000	56.0	7.18%	1510.2	3.27%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-6	-1.608e+01	0.0000	22.0	2.82%	331.8	0.72%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-6	-1.599e+01	0.0000	71.0	9.10%	2155.0	4.67%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-6	-1.562e+01	0.0000	71.0	9.10%	2177.2	4.72%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-6	-1.542e+01	0.0000	66.0	8.46%	1976.7	4.28%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-6	-1.392e+01	0.0000	38.0	4.87%	926.9	2.01%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-5	-1.356e+01	0.0000	23.0	2.95%	417.0	0.90%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-5	-1.314e+01	0.0000	214.0	27.44%	9447.3	20.47%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-5	-1.284e+01	0.0000	27.0	3.46%	569.9	1.23%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-5	-1.266e+01	0.0000	57.0	7.31%	1754.4	3.80%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-5	-1.265e+01	0.0000	56.0	7.18%	1712.4	3.71%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-4	-1.093e+01	0.0001	195.0	25.00%	8741.0	18.94%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-4	-1.038e+01	0.0002	22.0	2.82%	475.1	1.03%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-4	-1.015e+01	0.0002	90.0	11.54%	3462.1	7.50%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-4	-1.004e+01	0.0002	106.0	13.59%	4257.7	9.22%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-4	-1.004e+01	0.0002	41.0	5.26%	1229.2	2.66%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-4	-9.971e+00	0.0002	63.0	8.08%	2203.1	4.77%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-4	-9.910e+00	0.0003	97.0	12.44%	3827.5	8.29%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-4	-9.907e+00	0.0003	47.0	6.03%	1493.7	3.24%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-4	-9.647e+00	0.0003	72.0	9.23%	2648.1	5.74%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-3	-8.776e+00	0.0008	9.0	1.15%	112.2	0.24%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-3	-8.713e+00	0.0008	10.0	1.28%	139.7	0.30%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-8.521e+00	0.0010	42.0	5.38%	1365.5	2.96%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-3	-8.159e+00	0.0014	89.0	11.41%	3621.4	7.85%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-3	-8.084e+00	0.0015	222.0	28.46%	10668.8	23.12%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-3	-8.067e+00	0.0015	20.0	2.56%	485.7	1.05%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-3	-7.952e+00	0.0016	14.0	1.79%	277.3	0.60%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-3	-7.201e+00	0.0034	32.0	4.10%	1015.2	2.20%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-3	-7.167e+00	0.0035	20.0	2.56%	522.0	1.13%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-3	-6.947e+00	0.0043	26.0	3.33%	775.7	1.68%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-2	-6.888e+00	0.0045	11.0	1.41%	208.2	0.45%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-2	-6.625e+00	0.0057	54.0	6.92%	2070.8	4.49%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-2	-6.516e+00	0.0063	106.0	13.59%	4699.5	10.18%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-6.451e+00	0.0067	60.0	7.69%	2378.0	5.15%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-2	-6.445e+00	0.0067	6.0	0.77%	72.0	0.16%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-2	-6.408e+00	0.0068	33.0	4.23%	1112.6	2.41%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-2	-6.303e+00	0.0075	45.0	5.77%	1672.0	3.62%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-2	-6.267e+00	0.0077	57.0	7.31%	2251.6	4.88%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-6.257e+00	0.0077	12.0	1.54%	260.7	0.56%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-6.190e+00	0.0081	22.0	2.82%	650.3	1.41%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-6.011e+00	0.0096	14.0	1.79%	341.4	0.74%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-2	-5.895e+00	0.0107	41.0	5.26%	1520.1	3.29%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-2	-5.781e+00	0.0118	32.0	4.10%	1113.2	2.41%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-2	-5.358e+00	0.0179	6.0	0.77%	90.7	0.20%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-2	-5.337e+00	0.0181	15.0	1.92%	408.2	0.88%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-2	-5.296e+00	0.0186	9.0	1.15%	186.8	0.40%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-2	-5.256e+00	0.0192	38.0	4.87%	1436.5	3.11%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-5.120e+00	0.0218	17.0	2.18%	500.7	1.08%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-2	-5.096e+00	0.0221	101.0	12.95%	4660.5	10.10%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-2	-5.039e+00	0.0231	3.0	0.38%	22.8	0.05%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-2	-4.895e+00	0.0264	63.0	8.08%	2712.1	5.88%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-2	-4.737e+00	0.0307	25.0	3.21%	874.2	1.89%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-2	-4.703e+00	0.0314	87.0	11.15%	3986.8	8.64%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-4.539e+00	0.0367	76.0	9.74%	3435.6	7.44%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-4.447e+00	0.0399	35.0	4.49%	1370.9	2.97%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-4.345e+00	0.0437	5.0	0.64%	81.8	0.18%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-4.298e+00	0.0454	248.0	31.79%	12988.1	28.14%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-4.176e+00	0.0508	11.0	1.41%	302.8	0.66%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-4.171e+00	0.0508	39.0	5.00%	1595.8	3.46%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-4.115e+00	0.0531	73.0	9.36%	3346.5	7.25%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-4.075e+00	0.0547	68.0	8.72%	3090.6	6.70%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-4.065e+00	0.0548	119.0	15.26%	5827.0	12.62%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-4.063e+00	0.0548	15.0	1.92%	476.0	1.03%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-1	-3.996e+00	0.0577	42.0	5.38%	1765.7	3.83%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-3.907e+00	0.0625	6.0	0.77%	124.4	0.27%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-3.880e+00	0.0637	20.0	2.56%	711.9	1.54%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.776e+00	0.0701	5.0	0.64%	94.5	0.20%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-1	-3.734e+00	0.0725	29.0	3.72%	1151.9	2.50%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-3.670e+00	0.0767	44.0	5.64%	1908.8	4.14%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-3.625e+00	0.0795	81.0	10.38%	3858.5	8.36%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-1	-3.612e+00	0.0799	31.0	3.97%	1262.2	2.73%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.549e+00	0.0844	46.0	5.90%	2027.4	4.39%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-3.543e+00	0.0844	17.0	2.18%	599.2	1.30%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-1	-3.539e+00	0.0844	196.0	25.13%	10253.9	22.22%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-3.438e+00	0.0921	17.0	2.18%	607.4	1.32%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-3.398e+00	0.0951	43.0	5.51%	1894.2	4.10%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-3.295e+00	0.1046	31.0	3.97%	1298.4	2.81%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-3.221e+00	0.1118	11.0	1.41%	352.6	0.76%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-3.196e+00	0.1138	50.0	6.41%	2288.7	4.96%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-1	-3.170e+00	0.1159	31.0	3.97%	1313.5	2.85%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.077e+00	0.1262	9.0	1.15%	274.1	0.59%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-2.950e+00	0.1422	132.0	16.92%	6820.0	14.78%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-2.920e+00	0.1454	43.0	5.51%	1965.7	4.26%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-2.867e+00	0.1521	52.0	6.67%	2449.6	5.31%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-2.862e+00	0.1521	9.0	1.15%	286.5	0.62%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-2.845e+00	0.1533	10.0	1.28%	331.0	0.72%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-2.840e+00	0.1533	7.0	0.90%	202.4	0.44%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-2.805e+00	0.1574	22.0	2.82%	905.7	1.96%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-2.792e+00	0.1583	29.0	3.72%	1259.5	2.73%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-2.715e+00	0.1698	28.0	3.59%	1219.0	2.64%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-2.703e+00	0.1706	30.0	3.85%	1322.0	2.86%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-1	-2.700e+00	0.1706	12.0	1.54%	432.3	0.94%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-1	-2.670e+00	0.1738	29.0	3.72%	1275.2	2.76%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-2.637e+00	0.1785	27.0	3.46%	1177.1	2.55%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-1	-2.619e+00	0.1804	34.0	4.36%	1541.8	3.34%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-2.599e+00	0.1828	24.0	3.08%	1029.6	2.23%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-2.440e+00	0.2129	2.0	0.26%	29.5	0.06%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-1	-2.434e+00	0.2129	49.0	6.28%	2369.3	5.13%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-2.422e+00	0.2140	13.0	1.67%	502.0	1.09%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-2.416e+00	0.2140	5.0	0.64%	139.5	0.30%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-2.326e+00	0.2323	5.0	0.64%	143.0	0.31%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.298e+00	0.2376	6.0	0.77%	187.1	0.41%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.285e+00	0.2390	94.0	12.05%	4882.9	10.58%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.224e+00	0.2525	26.0	3.33%	1182.3	2.56%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-2.159e+00	0.2676	39.0	5.00%	1884.0	4.08%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.105e+00	0.2807	18.0	2.31%	784.4	1.70%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.060e+00	0.2917	5.0	0.64%	157.0	0.34%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.024e+00	0.3005	12.0	1.54%	490.5	1.06%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.011e+00	0.3026	32.0	4.10%	1534.0	3.32%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.996e+00	0.3054	2.0	0.26%	38.6	0.08%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.918e+00	0.3281	31.0	3.97%	1497.9	3.25%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.873e+00	0.3410	19.0	2.44%	866.6	1.88%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.861e+00	0.3430	1.0	0.13%	10.1	0.02%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.847e+00	0.3458	6.0	0.77%	214.7	0.47%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.796e+00	0.3619	19.0	2.44%	877.1	1.90%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.734e+00	0.3826	158.0	20.26%	8720.2	18.89%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.716e+00	0.3874	17.0	2.18%	783.4	1.70%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.712e+00	0.3874	10.0	1.28%	421.3	0.91%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.704e+00	0.3875	12.0	1.54%	524.5	1.14%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.699e+00	0.3875	5.0	0.64%	177.5	0.38%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.678e+00	0.3930	9.0	1.15%	374.4	0.81%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.625e+00	0.4119	7.0	0.90%	279.8	0.61%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.604e+00	0.4183	16.0	2.05%	746.5	1.62%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.602e+00	0.4183	43.0	5.51%	2222.8	4.82%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.576e+00	0.4253	37.0	4.74%	1895.1	4.11%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.557e+00	0.4309	1.0	0.13%	14.4	0.03%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.539e+00	0.4362	9.0	1.15%	388.4	0.84%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.527e+00	0.4390	71.0	9.10%	3819.2	8.27%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.527e+00	0.4390	30.0	3.85%	1519.6	3.29%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.496e+00	0.4481	5.0	0.64%	191.1	0.41%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.489e+00	0.4488	13.0	1.67%	603.8	1.31%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-1.456e+00	0.4614	5.0	0.64%	195.0	0.42%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.450e+00	0.4615	89.0	11.41%	4873.0	10.56%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.447e+00	0.4615	29.0	3.72%	1481.5	3.21%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.442e+00	0.4615	165.0	21.15%	9262.1	20.07%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.440e+00	0.4615	1.0	0.13%	16.9	0.04%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.390e+00	0.4795	3.0	0.38%	102.4	0.22%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.387e+00	0.4795	30.0	3.85%	1550.6	3.36%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.384e+00	0.4795	6.0	0.77%	250.6	0.54%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.373e+00	0.4805	3.0	0.38%	103.0	0.22%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.348e+00	0.4897	37.0	4.74%	1951.2	4.23%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.327e+00	0.4977	10.0	1.28%	465.7	1.01%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.307e+00	0.5053	12.0	1.54%	575.9	1.25%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.293e+00	0.5095	51.0	6.54%	2759.1	5.98%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.292e+00	0.5095	34.0	4.36%	1798.0	3.90%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.288e+00	0.5095	7.0	0.90%	311.9	0.68%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.286e+00	0.5095	16.0	2.05%	796.6	1.73%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.285e+00	0.5095	17.0	2.18%	851.3	1.84%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.278e+00	0.5095	58.0	7.44%	3163.9	6.85%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.272e+00	0.5095	56.0	7.18%	3051.9	6.61%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.262e+00	0.5095	32.0	4.10%	1692.5	3.67%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.215e+00	0.5294	29.0	3.72%	1535.6	3.33%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.188e+00	0.5413	21.0	2.69%	1092.0	2.37%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.186e+00	0.5413	4.0	0.51%	165.3	0.36%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.183e+00	0.5413	17.0	2.18%	870.2	1.89%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.182e+00	0.5413	32.0	4.10%	1713.9	3.71%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.179e+00	0.5413	73.0	9.36%	4061.3	8.80%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.167e+00	0.5413	17.0	2.18%	873.8	1.89%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.166e+00	0.5413	15.0	1.92%	762.0	1.65%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.166e+00	0.5413	30.0	3.85%	1604.3	3.48%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.162e+00	0.5413	5.0	0.64%	219.1	0.47%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.137e+00	0.5455	34.0	4.36%	1839.2	3.98%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.133e+00	0.5455	1.0	0.13%	23.7	0.05%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.126e+00	0.5464	18.0	2.31%	937.8	2.03%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.121e+00	0.5468	5.0	0.64%	223.3	0.48%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.114e+00	0.5483	80.0	10.26%	4493.2	9.74%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.094e+00	0.5565	19.0	2.44%	1000.4	2.17%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.081e+00	0.5615	11.0	1.41%	555.4	1.20%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.065e+00	0.5677	1.0	0.13%	25.2	0.05%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.058e+00	0.5690	4.0	0.51%	176.2	0.38%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.029e+00	0.5834	22.0	2.82%	1185.9	2.57%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.009e+00	0.5922	10.0	1.28%	512.0	1.11%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.006e+00	0.5922	5.0	0.64%	235.5	0.51%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-9.990e-01	0.5931	16.0	2.05%	851.8	1.85%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-9.942e-01	0.5933	24.0	3.08%	1308.4	2.83%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-9.683e-01	0.6062	32.0	4.10%	1775.3	3.85%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-9.465e-01	0.6169	22.0	2.82%	1206.2	2.61%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-9.439e-01	0.6169	15.0	1.92%	806.3	1.75%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-9.368e-01	0.6175	45.0	5.77%	2538.7	5.50%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-9.315e-01	0.6181	22.0	2.82%	1210.6	2.62%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-9.275e-01	0.6181	17.0	2.18%	924.1	2.00%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-9.257e-01	0.6181	4.0	0.51%	189.5	0.41%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-9.146e-01	0.6206	129.0	16.54%	7457.2	16.16%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-9.072e-01	0.6226	3.0	0.38%	136.1	0.29%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-9.063e-01	0.6226	89.0	11.41%	5118.4	11.09%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-8.968e-01	0.6238	1.0	0.13%	31.8	0.07%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-8.762e-01	0.6341	46.0	5.90%	2620.4	5.68%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-8.296e-01	0.6616	39.0	5.00%	2230.1	4.83%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-8.279e-01	0.6616	84.0	10.77%	4868.8	10.55%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-8.119e-01	0.6678	80.0	10.26%	4643.0	10.06%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-8.049e-01	0.6698	10.0	1.28%	548.6	1.19%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-7.800e-01	0.6838	6.0	0.77%	321.1	0.70%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-7.715e-01	0.6869	16.0	2.05%	905.5	1.96%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-7.706e-01	0.6869	10.0	1.28%	555.3	1.20%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-7.693e-01	0.6869	24.0	3.08%	1374.0	2.98%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-7.608e-01	0.6869	5.0	0.64%	266.6	0.58%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-7.433e-01	0.6952	27.0	3.46%	1559.8	3.38%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-7.250e-01	0.7052	9.0	1.15%	506.1	1.10%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-7.201e-01	0.7058	3.0	0.38%	155.7	0.34%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-6.931e-01	0.7223	1.0	0.13%	41.3	0.09%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-6.801e-01	0.7288	7.0	0.90%	397.8	0.86%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-6.788e-01	0.7288	28.0	3.59%	1642.1	3.56%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.654e-01	0.7338	65.0	8.33%	3841.7	8.32%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.622e-01	0.7338	14.0	1.79%	817.6	1.77%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-6.479e-01	0.7409	32.0	4.10%	1892.1	4.10%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.460e-01	0.7409	28.0	3.59%	1655.7	3.59%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-6.193e-01	0.7566	17.0	2.18%	1009.3	2.19%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.035e-01	0.7656	51.0	6.54%	3045.7	6.60%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-5.943e-01	0.7697	14.0	1.79%	837.9	1.82%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-5.825e-01	0.7759	12.0	1.54%	720.7	1.56%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-5.729e-01	0.7804	9.0	1.15%	541.3	1.17%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-5.613e-01	0.7866	7.0	0.90%	422.8	0.92%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.482e-01	0.7940	23.0	2.95%	1396.1	3.02%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-5.387e-01	0.7985	2.0	0.26%	116.6	0.25%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-5.372e-01	0.7985	4.0	0.51%	242.4	0.53%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.295e-01	0.7999	11.0	1.41%	675.4	1.46%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-5.186e-01	0.8056	10.0	1.28%	617.1	1.34%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-5.102e-01	0.8094	4.0	0.51%	247.8	0.54%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.897e-01	0.8231	6.0	0.77%	377.8	0.82%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-4.822e-01	0.8263	18.0	2.31%	1121.0	2.43%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.583e-01	0.8431	62.0	7.95%	3800.8	8.23%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-4.567e-01	0.8431	3.0	0.38%	193.1	0.42%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-4.407e-01	0.8519	3.0	0.38%	196.6	0.43%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-4.403e-01	0.8519	7.0	0.90%	453.1	0.98%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-4.332e-01	0.8521	54.0	6.92%	3337.0	7.23%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-4.303e-01	0.8521	3.0	0.38%	199.0	0.43%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-4.201e-01	0.8571	3.0	0.38%	200.5	0.43%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-4.135e-01	0.8597	2.0	0.26%	135.0	0.29%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-3.977e-01	0.8703	11.0	1.41%	720.9	1.56%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-3.915e-01	0.8726	24.0	3.08%	1533.5	3.32%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.856e-01	0.8747	4.0	0.51%	274.7	0.60%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-3.808e-01	0.8758	25.0	3.21%	1601.4	3.47%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.510e-01	0.8991	62.0	7.95%	3892.0	8.43%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-3.471e-01	0.8995	3.0	0.38%	216.7	0.47%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-3.440e-01	0.8995	68.0	8.72%	4263.5	9.24%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.398e-01	0.8998	12.0	1.54%	808.8	1.75%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.357e-01	0.9003	9.0	1.15%	617.6	1.34%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.328e-01	0.9003	2.0	0.26%	149.4	0.32%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-3.328e-01	0.9003	2.0	0.26%	149.4	0.32%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.286e-01	0.9003	14.0	1.79%	941.3	2.04%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-3.249e-01	0.9003	16.0	2.05%	1070.5	2.32%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.188e-01	0.9003	2.0	0.26%	152.9	0.33%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-3.133e-01	0.9020	47.0	6.03%	3008.6	6.52%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-3.049e-01	0.9065	1.0	0.13%	79.8	0.17%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-3.024e-01	0.9065	29.0	3.72%	1902.2	4.12%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.007e-01	0.9065	18.0	2.31%	1211.0	2.62%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-3.003e-01	0.9065	20.0	2.56%	1338.9	2.90%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.953e-01	0.9065	5.0	0.64%	368.4	0.80%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.604e-01	0.9321	3.0	0.38%	240.3	0.52%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.598e-01	0.9321	6.0	0.77%	450.9	0.98%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.598e-01	0.9321	6.0	0.77%	450.8	0.98%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-2.555e-01	0.9321	20.0	2.56%	1369.4	2.97%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-2.542e-01	0.9321	3.0	0.38%	242.7	0.53%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-2.476e-01	0.9321	81.0	10.38%	5170.3	11.20%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.395e-01	0.9332	2.0	0.26%	172.5	0.37%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-2.327e-01	0.9364	12.0	1.54%	866.3	1.88%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.298e-01	0.9364	5.0	0.64%	394.8	0.86%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.280e-01	0.9364	1.0	0.13%	94.7	0.21%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.280e-01	0.9364	24.0	3.08%	1647.5	3.57%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.236e-01	0.9364	8.0	1.03%	604.8	1.31%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.165e-01	0.9365	65.0	8.33%	4229.9	9.16%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-2.001e-01	0.9490	43.0	5.51%	2880.9	6.24%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.963e-01	0.9496	7.0	0.90%	551.3	1.19%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-1.880e-01	0.9545	3.0	0.38%	267.7	0.58%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.870e-01	0.9545	43.0	5.51%	2897.6	6.28%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.854e-01	0.9545	1.0	0.13%	105.2	0.23%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.727e-01	0.9601	3.0	0.38%	274.3	0.59%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.727e-01	0.9601	6.0	0.77%	495.3	1.07%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.447e-01	0.9812	7.0	0.90%	586.1	1.27%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.387e-01	0.9841	32.0	4.10%	2264.4	4.91%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.353e-01	0.9844	3.0	0.38%	294.2	0.64%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.344e-01	0.9844	67.0	8.59%	4494.7	9.74%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.279e-01	0.9855	6.0	0.77%	527.7	1.14%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.093e-01	1.0000	1.0	0.13%	134.0	0.29%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.080e-01	1.0000	14.0	1.79%	1115.0	2.42%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.039e-01	1.0000	8.0	1.03%	696.8	1.51%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.038e-01	1.0000	7.0	0.90%	623.9	1.35%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-9.476e-02	1.0000	1.0	0.13%	142.3	0.31%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-7.769e-02	1.0000	30.0	3.85%	2248.2	4.87%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-7.203e-02	1.0000	62.0	7.95%	4343.3	9.41%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-7.089e-02	1.0000	72.0	9.23%	4984.5	10.80%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-5.921e-02	1.0000	96.0	12.31%	6549.8	14.19%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-5.887e-02	1.0000	12.0	1.54%	1055.9	2.29%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.532e-02	1.0000	4.0	0.51%	468.5	1.02%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-4.232e-02	1.0000	1.0	0.13%	188.2	0.41%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-3.689e-02	1.0000	57.0	7.31%	4176.2	9.05%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-2.124e-02	1.0000	1.0	0.13%	228.2	0.49%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.023e-02	1.0000	138.0	17.69%	9488.2	20.56%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.011e-02	1.0000	12.0	1.54%	1185.8	2.57%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.966e-02	1.0000	2.0	0.26%	346.1	0.75%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.832e-02	1.0000	25.0	3.21%	2147.0	4.65%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-8.678e-03	1.0000	41.0	5.26%	3380.8	7.32%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-7.777e-03	1.0000	12.0	1.54%	1291.5	2.80%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-7.201e-03	1.0000	6.0	0.77%	801.8	1.74%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.458e-03	1.0000	2.0	0.26%	421.7	0.91%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-4.771e-03	1.0000	58.0	7.44%	4644.8	10.06%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-8.670e-04	1.0000	41.0	5.26%	3730.6	8.08%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.000e-06	1.0000	39.0	5.00%	4453.2	9.65%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	63.6	0.14%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	0.000e+00	1.0000	0.0	0.00%	48.6	0.11%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	72.3	0.16%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	4.9	0.01%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	0.000e+00	1.0000	0.0	0.00%	151.4	0.33%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	0.000e+00	1.0000	0.0	0.00%	82.0	0.18%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	22.3	0.05%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	0.0	0.00%	47.4	0.10%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	18.4	0.04%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	0.000e+00	1.0000	0.0	0.00%	233.5	0.51%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	6.1	0.01%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	0.000e+00	1.0000	0.0	0.00%	105.0	0.23%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	0.000e+00	1.0000	0.0	0.00%	34.1	0.07%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	0.000e+00	1.0000	0.0	0.00%	7.1	0.02%