Information for 6-AGCCAAAGCAACA (Motif 7)

C G T A A T C G G T A C A G T C C G T A C G T A C G T A A C T G A G T C C G T A C T G A A G T C C T G A
Reverse Opposite:
A G C T A C T G A G C T A C G T A C T G A G T C A C G T A C G T A C G T A C T G A C T G A T G C A C G T
p-value:1e-13
log p-value:-3.118e+01
Information Content per bp:1.933
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.7 +/- 27.1bp
Average Position of motif in Background65.5 +/- 13.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.67
Offset:2
Orientation:forward strand
Alignment:AGCCAAAGCAACA-
--SCCTAGCAACAG
 C G T A A T C G G T A C A G T C C G T A C G T A C G T A A C T G A G T C C G T A C T G A A G T C C T G A A C G T
A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0054.1_Rfx3_1/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----AGCCAAAGCAACA------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T C G T A A T C G G T A C A G T C C G T A C G T A C G T A A C T G A G T C C G T A C T G A A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGCCAAAGCAACA--
TACCATAGCAACGGT
 C G T A A T C G G T A C A G T C C G T A C G T A C G T A A C T G A G T C C G T A C T G A A G T C C T G A A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AGCCAAAGCAACA--
CCGCATAGCAACGGA
 C G T A A T C G G T A C A G T C C G T A C G T A C G T A A C T G A G T C C G T A C T G A A G T C C T G A A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AGCCAAAGCAACA
AAACAGACAAAGGAAT-
 A C G T A C G T A C G T A C G T C G T A A T C G G T A C A G T C C G T A C G T A C G T A A C T G A G T C C G T A C T G A A G T C C T G A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AGCCAAAGCAACA
GTTGCCATGGCAAC-
 A C G T A C G T C G T A A T C G G T A C A G T C C G T A C G T A C G T A A C T G A G T C C G T A C T G A A G T C C T G A
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGCCAAAGCAACA
TTGCCATGGCAACN
 A C G T C G T A A T C G G T A C A G T C C G T A C G T A C G T A A C T G A G T C C G T A C T G A A G T C C T G A
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGCCAAAGCAACA
TTGCCATGGCAACC
 A C G T C G T A A T C G G T A C A G T C C G T A C G T A C G T A A C T G A G T C C G T A C T G A A G T C C T G A
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AGCCAAAGCAACA---
TGCCAAAATAAACANN
 C G T A A T C G G T A C A G T C C G T A C G T A C G T A A C T G A G T C C G T A C T G A A G T C C T G A A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

Foxd3/MA0041.1/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AGCCAAAGCAACA---
----AAACAAACATTC
 C G T A A T C G G T A C A G T C C G T A C G T A C G T A A C T G A G T C C G T A C T G A A G T C C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C