Information for 18-GCTAAKGAGA (Motif 25)

A T C G A G T C C G A T T C G A T C G A A C T G C T A G G T C A A T C G C G T A
Reverse Opposite:
C G A T A T G C A C G T A G T C T G A C A G C T A G C T C G T A A C T G A T G C
p-value:1e-4
log p-value:-1.097e+01
Information Content per bp:1.777
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.38%
Number of Background Sequences with motif617.6
Percentage of Background Sequences with motif1.31%
Average Position of motif in Targets49.5 +/- 24.4bp
Average Position of motif in Background51.2 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0098.1_Lhx8/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GCTAAKGAGA---
CACCGCTAATTAGNNGN
 A C G T A C G T A C G T A C G T A T C G A G T C C G A T T C G A T C G A A C T G C T A G G T C A A T C G C G T A A C G T A C G T A C G T
G A T C T G C A G T A C G T A C T C A G T G A C G A C T T C G A C T G A A G C T A G C T C T G A A C T G A C T G A C T G A C T G C G A T

PH0032.1_Evx2/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCTAAKGAGA---
CACCGCTAATTAGCGGT
 A C G T A C G T A C G T A C G T A T C G A G T C C G A T T C G A T C G A A C T G C T A G G T C A A T C G C G T A A C G T A C G T A C G T
A G T C T G C A G A T C G T A C T C A G A T G C A G C T T G C A C G T A A C G T A C G T C T G A A T C G A T G C A C T G A C G T G C A T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCTAAKGAGA----
GACGATAATGAGCTTGC
 A C G T A C G T A C G T A T C G A G T C C G A T T C G A T C G A A C T G C T A G G T C A A T C G C G T A A C G T A C G T A C G T A C G T
T A C G G C T A T G A C T A C G G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G A T C G G C A T C A G T C T A G G T A C

PH0097.1_Lhx6_2/Jaspar

Match Rank:4
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GCTAAKGAGA---
NNNCGCTAATTAGNNGA
 A C G T A C G T A C G T A C G T A T C G A G T C C G A T T C G A T C G A A C T G C T A G G T C A A T C G C G T A A C G T A C G T A C G T
T G C A G C T A G A T C G T A C T C A G G A T C G A C T T C G A C T G A A G C T A G C T C T G A C T A G A G C T C A T G A C T G C G T A

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCTAAKGAGA
NGCTN------
 A C G T A T C G A G T C C G A T T C G A T C G A A C T G C T A G G T C A A T C G C G T A
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PH0031.1_Evx1/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GCTAAKGAGA---
NNNCACTAATTAGTNNT
 A C G T A C G T A C G T A C G T A T C G A G T C C G A T T C G A T C G A A C T G C T A G G T C A A T C G C G T A A C G T A C G T A C G T
A C T G G C A T A T G C T A G C T C G A A T G C G A C T G T C A G T C A A C G T A C G T C T G A T A C G A G C T C A G T A G T C C G A T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCTAAKGAGA
WATGCAAATGAG-
 A C G T A C G T A C G T A T C G A G T C C G A T T C G A T C G A A C T G C T A G G T C A A T C G C G T A
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T

HOXA2/MA0900.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCTAAKGAGA
GNTAATTANN
 A T C G A G T C C G A T T C G A T C G A A C T G C T A G G T C A A T C G C G T A
A T C G A T C G C G A T C T G A G T C A A G C T A C G T C T G A A T C G A T C G

PH0152.1_Pou6f1_2/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GCTAAKGAGA----
AAACATAATGAGGTTGC
 A C G T A C G T A C G T A T C G A G T C C G A T T C G A T C G A A C T G C T A G G T C A A T C G C G T A A C G T A C G T A C G T A C G T
T C G A G T C A G C T A T A G C G C T A C G A T C G T A C G T A A C G T C A T G C G T A A C T G T A C G G C A T C A G T A C T G G T A C

PH0131.1_Pax4/Jaspar

Match Rank:10
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GCTAAKGAGA---
NNGNGCTAATTAGNTNA
 A C G T A C G T A C G T A C G T A T C G A G T C C G A T T C G A T C G A A C T G C T A G G T C A A T C G C G T A A C G T A C G T A C G T
C A T G G A C T A T C G T C A G C T A G A G T C C A G T C G T A C T G A A G C T G A C T G T C A C T A G G C A T A G C T A T G C C G T A