Information for 5-GCATAGAAACCGG (Motif 4)

A C T G A G T C C G T A A C G T C T G A A C T G G T C A C G T A G T C A A G T C G T A C C T A G A C T G
Reverse Opposite:
A G T C A G T C A C T G A C T G A C G T A C G T A C G T A G T C A G C T C G T A A C G T A C T G A G T C
p-value:1e-10
log p-value:-2.501e+01
Information Content per bp:1.929
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.2 +/- 21.3bp
Average Position of motif in Background41.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GCATAGAAACCGG
CCGCATAGCAACGGA
 A C G T A C G T A C T G A G T C C G T A A C G T C T G A A C T G G T C A C G T A G T C A A G T C G T A C C T A G A C T G
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GCATAGAAACCGG
SCCTAGCAACAG-
 A C T G A G T C C G T A A C G T C T G A A C T G G T C A C G T A G T C A A G T C G T A C C T A G A C T G
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GCATAGAAACCGG
TACCATAGCAACGGT
 A C G T A C G T A C T G A G T C C G T A A C G T C T G A A C T G G T C A C G T A G T C A A G T C G T A C C T A G A C T G
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------GCATAGAAACCGG----
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T C T G A A C T G G T C A C G T A G T C A A G T C G T A C C T A G A C T G A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

TFCP2/MA0145.3/Jaspar

Match Rank:5
Score:0.62
Offset:6
Orientation:forward strand
Alignment:GCATAGAAACCGG---
------AAACCGGTTT
 A C T G A G T C C G T A A C G T C T G A A C T G G T C A C G T A G T C A A G T C G T A C C T A G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T

PB0034.1_Irf4_1/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCATAGAAACCGG-
CGTATCGAAACCAAA
 A C G T A C T G A G T C C G T A A C G T C T G A A C T G G T C A C G T A G T C A A G T C G T A C C T A G A C T G A C G T
T G A C C T A G C G A T C G T A G A C T A G T C C T A G T C G A C G T A C G T A T A G C G A T C C T G A G T C A C G T A

PB0033.1_Irf3_1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCATAGAAACCGG
GAGAACCGAAACTG-
 A C G T A C G T A C T G A G T C C G T A A C G T C T G A A C T G G T C A C G T A G T C A A G T C G T A C C T A G A C T G
A C T G C T G A C T A G C G T A G C T A G T A C T A G C C T A G T C G A G C T A G C T A A T G C G A C T C T A G A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCATAGAAACCGG
TGTTKCCTAGCAACM--
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T C T G A A C T G G T C A C G T A G T C A A G T C G T A C C T A G A C T G
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GCATAGAAACCGG
TTGCCATGGCAACC--
 A C G T A C G T A C G T A C T G A G T C C G T A A C G T C T G A A C T G G T C A C G T A G T C A A G T C G T A C C T A G A C T G
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCATAGAAACCGG
GTTGCCATGGCAAC---
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T C T G A A C T G G T C A C G T A G T C A A G T C G T A C C T A G A C T G
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T