Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
SVG |
1 |
| GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-47 | -1.098e+02 | 0.0000 | 222.0 | 27.72% | 4471.8 | 9.56% | motif file (matrix) |
svg |
2 |
| Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer | 1e-47 | -1.094e+02 | 0.0000 | 172.0 | 21.47% | 2805.6 | 6.00% | motif file (matrix) |
svg |
3 |
| Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-46 | -1.079e+02 | 0.0000 | 126.0 | 15.73% | 1530.1 | 3.27% | motif file (matrix) |
svg |
4 |
| Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-46 | -1.074e+02 | 0.0000 | 135.0 | 16.85% | 1772.6 | 3.79% | motif file (matrix) |
svg |
5 |
| REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer | 1e-45 | -1.058e+02 | 0.0000 | 27.0 | 3.37% | 14.0 | 0.03% | motif file (matrix) |
svg |
6 |
| Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer | 1e-42 | -9.896e+01 | 0.0000 | 159.0 | 19.85% | 2626.9 | 5.61% | motif file (matrix) |
svg |
7 |
| CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer | 1e-27 | -6.338e+01 | 0.0000 | 131.0 | 16.35% | 2589.5 | 5.53% | motif file (matrix) |
svg |
8 |
| HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer | 1e-25 | -5.887e+01 | 0.0000 | 140.0 | 17.48% | 3041.0 | 6.50% | motif file (matrix) |
svg |
9 |
| Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer | 1e-25 | -5.875e+01 | 0.0000 | 111.0 | 13.86% | 2048.2 | 4.38% | motif file (matrix) |
svg |
10 |
| Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-16 | -3.804e+01 | 0.0000 | 89.0 | 11.11% | 1897.4 | 4.05% | motif file (matrix) |
svg |
11 |
| Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer | 1e-15 | -3.609e+01 | 0.0000 | 72.0 | 8.99% | 1379.6 | 2.95% | motif file (matrix) |
svg |
12 |
| Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-15 | -3.546e+01 | 0.0000 | 173.0 | 21.60% | 5395.5 | 11.53% | motif file (matrix) |
svg |
13 |
| HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer | 1e-15 | -3.533e+01 | 0.0000 | 127.0 | 15.86% | 3445.5 | 7.36% | motif file (matrix) |
svg |
14 |
| FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-14 | -3.397e+01 | 0.0000 | 124.0 | 15.48% | 3387.7 | 7.24% | motif file (matrix) |
svg |
15 |
| Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer | 1e-14 | -3.340e+01 | 0.0000 | 91.0 | 11.36% | 2128.5 | 4.55% | motif file (matrix) |
svg |
16 |
| Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer | 1e-14 | -3.291e+01 | 0.0000 | 105.0 | 13.11% | 2678.7 | 5.72% | motif file (matrix) |
svg |
17 |
| FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-13 | -3.026e+01 | 0.0000 | 105.0 | 13.11% | 2794.9 | 5.97% | motif file (matrix) |
svg |
18 |
| HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer | 1e-12 | -2.972e+01 | 0.0000 | 78.0 | 9.74% | 1786.5 | 3.82% | motif file (matrix) |
svg |
19 |
| Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer | 1e-12 | -2.916e+01 | 0.0000 | 84.0 | 10.49% | 2028.6 | 4.34% | motif file (matrix) |
svg |
20 |
| FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer | 1e-12 | -2.773e+01 | 0.0000 | 95.0 | 11.86% | 2512.7 | 5.37% | motif file (matrix) |
svg |
21 |
| FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer | 1e-11 | -2.699e+01 | 0.0000 | 103.0 | 12.86% | 2868.1 | 6.13% | motif file (matrix) |
svg |
22 |
| Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer | 1e-11 | -2.655e+01 | 0.0000 | 143.0 | 17.85% | 4605.1 | 9.84% | motif file (matrix) |
svg |
23 |
| Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer | 1e-11 | -2.654e+01 | 0.0000 | 163.0 | 20.35% | 5512.7 | 11.78% | motif file (matrix) |
svg |
24 |
| FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer | 1e-10 | -2.391e+01 | 0.0000 | 64.0 | 7.99% | 1488.3 | 3.18% | motif file (matrix) |
svg |
25 |
| FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer | 1e-10 | -2.380e+01 | 0.0000 | 96.0 | 11.99% | 2742.2 | 5.86% | motif file (matrix) |
svg |
26 |
| Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer | 1e-9 | -2.299e+01 | 0.0000 | 226.0 | 28.21% | 8843.7 | 18.90% | motif file (matrix) |
svg |
27 |
| Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer | 1e-9 | -2.107e+01 | 0.0000 | 127.0 | 15.86% | 4252.5 | 9.09% | motif file (matrix) |
svg |
28 |
| Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer | 1e-9 | -2.090e+01 | 0.0000 | 41.0 | 5.12% | 789.9 | 1.69% | motif file (matrix) |
svg |
29 |
| GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer | 1e-8 | -1.943e+01 | 0.0000 | 101.0 | 12.61% | 3205.1 | 6.85% | motif file (matrix) |
svg |
30 |
| Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer | 1e-8 | -1.938e+01 | 0.0000 | 72.0 | 8.99% | 1988.4 | 4.25% | motif file (matrix) |
svg |
31 |
| YY1(Zf)/Promoter/Homer | 1e-8 | -1.924e+01 | 0.0000 | 16.0 | 2.00% | 138.2 | 0.30% | motif file (matrix) |
svg |
32 |
| ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer | 1e-8 | -1.847e+01 | 0.0000 | 45.0 | 5.62% | 1000.1 | 2.14% | motif file (matrix) |
svg |
33 |
| FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-7 | -1.815e+01 | 0.0000 | 48.0 | 5.99% | 1119.8 | 2.39% | motif file (matrix) |
svg |
34 |
| Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-7 | -1.809e+01 | 0.0000 | 74.0 | 9.24% | 2135.9 | 4.56% | motif file (matrix) |
svg |
35 |
| Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-7 | -1.755e+01 | 0.0000 | 102.0 | 12.73% | 3374.0 | 7.21% | motif file (matrix) |
svg |
36 |
| Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer | 1e-7 | -1.707e+01 | 0.0000 | 69.0 | 8.61% | 1984.0 | 4.24% | motif file (matrix) |
svg |
37 |
| Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-7 | -1.686e+01 | 0.0000 | 40.0 | 4.99% | 879.8 | 1.88% | motif file (matrix) |
svg |
38 |
| GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-7 | -1.685e+01 | 0.0000 | 17.0 | 2.12% | 187.9 | 0.40% | motif file (matrix) |
svg |
39 |
| EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-7 | -1.659e+01 | 0.0000 | 22.0 | 2.75% | 317.3 | 0.68% | motif file (matrix) |
svg |
40 |
| Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-7 | -1.644e+01 | 0.0000 | 26.0 | 3.25% | 434.5 | 0.93% | motif file (matrix) |
svg |
41 |
| Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-7 | -1.621e+01 | 0.0000 | 260.0 | 32.46% | 11344.2 | 24.24% | motif file (matrix) |
svg |
42 |
| Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer | 1e-6 | -1.590e+01 | 0.0000 | 47.0 | 5.87% | 1170.0 | 2.50% | motif file (matrix) |
svg |
43 |
| Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer | 1e-6 | -1.559e+01 | 0.0000 | 72.0 | 8.99% | 2192.9 | 4.69% | motif file (matrix) |
svg |
44 |
| ETS(ETS)/Promoter/Homer | 1e-6 | -1.473e+01 | 0.0000 | 30.0 | 3.75% | 605.6 | 1.29% | motif file (matrix) |
svg |
45 |
| Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer | 1e-6 | -1.466e+01 | 0.0000 | 105.0 | 13.11% | 3725.3 | 7.96% | motif file (matrix) |
svg |
46 |
| Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer | 1e-6 | -1.403e+01 | 0.0000 | 42.0 | 5.24% | 1059.8 | 2.26% | motif file (matrix) |
svg |
47 |
| Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer | 1e-6 | -1.384e+01 | 0.0000 | 133.0 | 16.60% | 5129.4 | 10.96% | motif file (matrix) |
svg |
48 |
| GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-5 | -1.344e+01 | 0.0000 | 55.0 | 6.87% | 1603.1 | 3.43% | motif file (matrix) |
svg |
49 |
| Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer | 1e-5 | -1.310e+01 | 0.0000 | 264.0 | 32.96% | 11981.6 | 25.61% | motif file (matrix) |
svg |
50 |
| Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer | 1e-5 | -1.268e+01 | 0.0000 | 124.0 | 15.48% | 4806.9 | 10.27% | motif file (matrix) |
svg |
51 |
| Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.242e+01 | 0.0000 | 42.0 | 5.24% | 1131.8 | 2.42% | motif file (matrix) |
svg |
52 |
| Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-5 | -1.236e+01 | 0.0000 | 78.0 | 9.74% | 2670.6 | 5.71% | motif file (matrix) |
svg |
53 |
| Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer | 1e-5 | -1.215e+01 | 0.0000 | 151.0 | 18.85% | 6199.5 | 13.25% | motif file (matrix) |
svg |
54 |
| Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer | 1e-5 | -1.185e+01 | 0.0000 | 22.0 | 2.75% | 425.8 | 0.91% | motif file (matrix) |
svg |
55 |
| Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer | 1e-5 | -1.160e+01 | 0.0001 | 104.0 | 12.98% | 3946.5 | 8.43% | motif file (matrix) |
svg |
56 |
| ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-4 | -1.142e+01 | 0.0001 | 58.0 | 7.24% | 1850.5 | 3.95% | motif file (matrix) |
svg |
57 |
| EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-4 | -1.096e+01 | 0.0001 | 55.0 | 6.87% | 1750.4 | 3.74% | motif file (matrix) |
svg |
58 |
| Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer | 1e-4 | -1.095e+01 | 0.0001 | 19.0 | 2.37% | 353.2 | 0.75% | motif file (matrix) |
svg |
59 |
| EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer | 1e-4 | -1.055e+01 | 0.0002 | 35.0 | 4.37% | 944.2 | 2.02% | motif file (matrix) |
svg |
60 |
| CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer | 1e-4 | -1.049e+01 | 0.0002 | 154.0 | 19.23% | 6554.9 | 14.01% | motif file (matrix) |
svg |
61 |
| EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer | 1e-4 | -1.030e+01 | 0.0002 | 68.0 | 8.49% | 2375.6 | 5.08% | motif file (matrix) |
svg |
62 |
| Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer | 1e-4 | -1.025e+01 | 0.0002 | 46.0 | 5.74% | 1411.0 | 3.02% | motif file (matrix) |
svg |
63 |
| E-box(bHLH)/Promoter/Homer | 1e-4 | -1.005e+01 | 0.0003 | 11.0 | 1.37% | 141.1 | 0.30% | motif file (matrix) |
svg |
64 |
| Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967) | 1e-4 | -1.004e+01 | 0.0003 | 49.0 | 6.12% | 1551.8 | 3.32% | motif file (matrix) |
svg |
65 |
| ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-4 | -9.877e+00 | 0.0003 | 77.0 | 9.61% | 2826.5 | 6.04% | motif file (matrix) |
svg |
66 |
| GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-4 | -9.872e+00 | 0.0003 | 17.0 | 2.12% | 318.3 | 0.68% | motif file (matrix) |
svg |
67 |
| Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-4 | -9.800e+00 | 0.0003 | 22.0 | 2.75% | 488.8 | 1.04% | motif file (matrix) |
svg |
68 |
| ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-4 | -9.783e+00 | 0.0003 | 71.0 | 8.86% | 2555.0 | 5.46% | motif file (matrix) |
svg |
69 |
| Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.702e+00 | 0.0003 | 41.0 | 5.12% | 1232.5 | 2.63% | motif file (matrix) |
svg |
70 |
| TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer | 1e-3 | -8.948e+00 | 0.0007 | 9.0 | 1.12% | 108.9 | 0.23% | motif file (matrix) |
svg |
71 |
| c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer | 1e-3 | -8.860e+00 | 0.0007 | 32.0 | 4.00% | 908.0 | 1.94% | motif file (matrix) |
svg |
72 |
| PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer | 1e-3 | -8.681e+00 | 0.0009 | 9.0 | 1.12% | 113.0 | 0.24% | motif file (matrix) |
svg |
73 |
| GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-3 | -8.039e+00 | 0.0016 | 13.0 | 1.62% | 239.1 | 0.51% | motif file (matrix) |
svg |
74 |
| Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-3 | -7.722e+00 | 0.0022 | 47.0 | 5.87% | 1625.6 | 3.47% | motif file (matrix) |
svg |
75 |
| TATA-Box(TBP)/Promoter/Homer | 1e-3 | -7.570e+00 | 0.0025 | 88.0 | 10.99% | 3591.3 | 7.68% | motif file (matrix) |
svg |
76 |
| Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer | 1e-2 | -6.685e+00 | 0.0060 | 24.0 | 3.00% | 697.7 | 1.49% | motif file (matrix) |
svg |
77 |
| CRE(bZIP)/Promoter/Homer | 1e-2 | -6.633e+00 | 0.0062 | 15.0 | 1.87% | 350.1 | 0.75% | motif file (matrix) |
svg |
78 |
| BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.424e+00 | 0.0076 | 13.0 | 1.62% | 286.2 | 0.61% | motif file (matrix) |
svg |
79 |
| MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer | 1e-2 | -6.244e+00 | 0.0089 | 21.0 | 2.62% | 598.6 | 1.28% | motif file (matrix) |
svg |
80 |
| Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer | 1e-2 | -6.114e+00 | 0.0101 | 116.0 | 14.48% | 5215.6 | 11.15% | motif file (matrix) |
svg |
81 |
| EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.106e+00 | 0.0101 | 37.0 | 4.62% | 1299.4 | 2.78% | motif file (matrix) |
svg |
82 |
| USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -6.075e+00 | 0.0102 | 24.0 | 3.00% | 731.7 | 1.56% | motif file (matrix) |
svg |
83 |
| CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-2 | -5.978e+00 | 0.0111 | 28.0 | 3.50% | 908.6 | 1.94% | motif file (matrix) |
svg |
84 |
| ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer | 1e-2 | -5.731e+00 | 0.0141 | 35.0 | 4.37% | 1238.1 | 2.65% | motif file (matrix) |
svg |
85 |
| HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer | 1e-2 | -5.715e+00 | 0.0141 | 10.0 | 1.25% | 205.1 | 0.44% | motif file (matrix) |
svg |
86 |
| ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer | 1e-2 | -5.546e+00 | 0.0165 | 36.0 | 4.49% | 1299.1 | 2.78% | motif file (matrix) |
svg |
87 |
| BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer | 1e-2 | -5.344e+00 | 0.0200 | 88.0 | 10.99% | 3885.1 | 8.30% | motif file (matrix) |
svg |
88 |
| bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.319e+00 | 0.0203 | 18.0 | 2.25% | 524.4 | 1.12% | motif file (matrix) |
svg |
89 |
| HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer | 1e-2 | -4.951e+00 | 0.0289 | 54.0 | 6.74% | 2221.5 | 4.75% | motif file (matrix) |
svg |