Information for 9-CACAAAGAATTACAAT (Motif 23)

A G T C C G T A A G T C C G T A C G T A C T G A A C T G C G T A C G T A A G C T A C G T C G T A A G T C C T G A G T C A A C G T
Reverse Opposite:
C G T A A C G T A G C T A C T G A C G T C G T A C T G A A C G T C G A T A G T C A G C T A C G T C G A T A C T G A C G T A C T G
p-value:1e-8
log p-value:-1.947e+01
Information Content per bp:1.884
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.8 +/- 19.1bp
Average Position of motif in Background26.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CACAAAGAATTACAAT
AAACAGACAAAGGAAT-----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A C T G A A C T G C G T A C G T A A G C T A C G T C G T A A G T C C T G A G T C A A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CACAAAGAATTACAAT
AGAAGAACAAAGGACTA----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A C T G A A C T G C G T A C G T A A G C T A C G T C G T A A G T C C T G A G T C A A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CACAAAGAATTACAAT
-ACAAAG---------
 A G T C C G T A A G T C C G T A C G T A C T G A A C T G C G T A C G T A A G C T A C G T C G T A A G T C C T G A G T C A A C G T
A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CACAAAGAATTACAAT
ATAAGAACAAAGGACTA----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A G T C C G T A C G T A C T G A A C T G C G T A C G T A A G C T A C G T C G T A A G T C C T G A G T C A A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A A C G T A C G T A C G T A C G T

PB0079.1_Sry_1/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CACAAAGAATTACAAT----
----TATAATTATAATATTC
 A G T C C G T A A G T C C G T A C G T A C T G A A C T G C G T A C G T A A G C T A C G T C G T A A G T C C T G A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C

PB0064.1_Sox14_1/Jaspar

Match Rank:6
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CACAAAGAATTACAAT----
----GCTAATTATAATTATC
 A G T C C G T A A G T C C G T A C G T A C T G A A C T G C G T A C G T A A G C T A C G T C G T A A G T C C T G A G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G G A T C G A C T G C T A G C T A C G A T C G A T C T G A G A C T C G T A G C T A C G A T C G A T C G T A C A G T G T A C

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CACAAAGAATTACAAT
---AAACMATTAN---
 A G T C C G T A A G T C C G T A C G T A C T G A A C T G C G T A C G T A A G C T A C G T C G T A A G T C C T G A G T C A A C G T
A C G T A C G T A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CACAAAGAATTACAAT
VRRACAAWGG--------
 A C G T A C G T A G T C C G T A A G T C C G T A C G T A C T G A A C T G C G T A C G T A A G C T A C G T C G T A A G T C C T G A G T C A A C G T
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0108.1_Msx3/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CACAAAGAATTACAAT
CAAAACCAATTAATTT
 A G T C C G T A A G T C C G T A C G T A C T G A A C T G C G T A C G T A A G C T A C G T C G T A A G T C C T G A G T C A A C G T
T G A C T C G A G T C A C T G A T C G A A T G C A G T C C T G A G T C A C G A T G A C T C G T A C T G A A C G T G A C T G C A T

PB0172.1_Sox1_2/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CACAAAGAATTACAAT
NNNTAACAATTATAN-
 A G T C C G T A A G T C C G T A C G T A C T G A A C T G C G T A C G T A A G C T A C G T C G T A A G T C C T G A G T C A A C G T
A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G A C G T