Information for 13-CTTAAGTGCT (Motif 20)

T G A C G A C T C A G T C T G A C G T A C A T G C G A T T A C G G T A C G C A T
Reverse Opposite:
C G T A C A T G A T G C G C T A G T A C G C A T G A C T G T C A C T G A A C T G
p-value:1e-10
log p-value:-2.426e+01
Information Content per bp:1.657
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif5.12%
Number of Background Sequences with motif703.4
Percentage of Background Sequences with motif1.50%
Average Position of motif in Targets40.8 +/- 25.3bp
Average Position of motif in Background50.1 +/- 32.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:1
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:CTTAAGTGCT-
-TTAAGTGCTT
 T G A C G A C T C A G T C T G A C G T A C A T G C G A T T A C G G T A C G C A T A C G T
A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

ISL2/MA0914.1/Jaspar

Match Rank:2
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:CTTAAGTGCT
-TTAAGTGC-
 T G A C G A C T C A G T C T G A C G T A C A T G C G A T T A C G G T A C G C A T
A C G T G A C T C G A T C T G A G C T A C A T G C G A T C T A G A T G C A C G T

NKX3-2/MA0122.2/Jaspar

Match Rank:3
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:CTTAAGTGCT
-TTAAGTGGN
 T G A C G A C T C A G T C T G A C G T A C A T G C G A T T A C G G T A C G C A T
A C G T G A C T C G A T C T G A T C G A C A T G C G A T C T A G A T C G A G C T

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:CTTAAGTGCT
-TTAAGTGGT
 T G A C G A C T C A G T C T G A C G T A C A T G C G A T T A C G G T A C G C A T
A C G T G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T

PH0004.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---CTTAAGTGCT----
NTNNTTAAGTGGTTANN
 A C G T A C G T A C G T T G A C G A C T C A G T C T G A C G T A C A T G C G A T T A C G G T A C G C A T A C G T A C G T A C G T A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:CTTAAGTGCT
CTYRAGTGSY
 T G A C G A C T C A G T C T G A C G T A C A T G C G A T T A C G G T A C G C A T
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:CTTAAGTGCT
NTCAAGTGGN
 T G A C G A C T C A G T C T G A C G T A C A T G C G A T T A C G G T A C G C A T
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.81
Offset:1
Orientation:forward strand
Alignment:CTTAAGTGCT-
-TTRAGTGSYK
 T G A C G A C T C A G T C T G A C G T A C A T G C G A T T A C G G T A C G C A T A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:CTTAAGTGCT-
-TTGAGTGSTT
 T G A C G A C T C A G T C T G A C G T A C A T G C G A T T A C G G T A C G C A T A C G T
A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:10
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---CTTAAGTGCT----
NTNNTTAAGTGGNTNAN
 A C G T A C G T A C G T T G A C G A C T C A G T C T G A C G T A C A T G C G A T T A C G G T A C G C A T A C G T A C G T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G