Information for 18-AATCCCTGGCTGT (Motif 19)

G C T A T G C A G C A T A G T C G A T C G A T C G A C T C A T G C T A G A G T C A C G T A C T G A G C T
Reverse Opposite:
C T G A A G T C G T C A A C T G G A T C G T A C C G T A C A T G C A T G T C A G C G T A A C G T C G A T
p-value:1e-10
log p-value:-2.457e+01
Information Content per bp:1.650
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.12%
Number of Background Sequences with motif268.8
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets47.7 +/- 24.5bp
Average Position of motif in Background48.5 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.67
Offset:8
Orientation:forward strand
Alignment:AATCCCTGGCTGT-
--------GCTGTG
 G C T A T G C A G C A T A G T C G A T C G A T C G A C T C A T G C T A G A G T C A C G T A C T G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:AATCCCTGGCTGT-
--CCCCCTGCTGTG
 G C T A T G C A G C A T A G T C G A T C G A T C G A C T C A T G C T A G A G T C A C G T A C T G A G C T A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AATCCCTGGCTGT
-----TWGTCTGV
 G C T A T G C A G C A T A G T C G A T C G A T C G A C T C A T G C T A G A G T C A C G T A C T G A G C T
A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AATCCCTGGCTGT----
--TCNCCTGCTGNGNNN
 G C T A T G C A G C A T A G T C G A T C G A T C G A C T C A T G C T A G A G T C A C G T A C T G A G C T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0195.1_Zbtb3_2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AATCCCTGGCTGT--
CAATCACTGGCAGAAT
 A C G T G C T A T G C A G C A T A G T C G A T C G A T C G A C T C A T G C T A G A G T C A C G T A C T G A G C T A C G T A C G T
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AATCCCTGGCTGT----
--TNTCCTGCTGTGNNG
 G C T A T G C A G C A T A G T C G A T C G A T C G A C T C A T G C T A G A G T C A C G T A C T G A G C T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0207.1_Zic3_2/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:AATCCCTGGCTGT----
--NNTCCTGCTGTGNNN
 G C T A T G C A G C A T A G T C G A T C G A T C G A C T C A T G C T A G A G T C A C G T A C T G A G C T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AATCCCTGGCTGT
GTCATGCHTGRCTGS
 A C G T A C G T G C T A T G C A G C A T A G T C G A T C G A T C G A C T C A T G C T A G A G T C A C G T A C T G A G C T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:AATCCCTGGCTGT
-----CTGTCTGG
 G C T A T G C A G C A T A G T C G A T C G A T C G A C T C A T G C T A G A G T C A C G T A C T G A G C T
A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:10
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:AATCCCTGGCTGT
-------NGCTN-
 G C T A T G C A G C A T A G T C G A T C G A T C G A C T C A T G C T A G A G T C A C G T A C T G A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T