Information for 2-CGGRACCTTTCTGTCC (Motif 3)

A G T C A C T G C T A G C T A G C T G A G A T C A G T C A C G T A C G T C A G T A G T C A C G T A T C G A C G T G A T C A T G C
Reverse Opposite:
A T C G C A T G C G T A T A G C C G T A A C T G G T C A C G T A G T C A A C T G C T A G A G C T A G T C A G T C T A G C A C T G
p-value:1e-13
log p-value:-3.118e+01
Information Content per bp:1.767
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif2.07%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.4 +/- 26.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CGGRACCTTTCTGTCC
NNGCACCTTTCTCC--
 A G T C A C T G C T A G C T A G C T G A G A T C A G T C A C G T A C G T C A G T A G T C A C G T A T C G A C G T G A T C A T G C
A G C T G A T C T C A G T A G C G C T A A T G C T A G C G C A T C G A T G C A T G A T C G C A T G T A C G A T C A C G T A C G T

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CGGRACCTTTCTGTCC
-----ACTTCCTGTT-
 A G T C A C T G C T A G C T A G C T G A G A T C A G T C A C G T A C G T C A G T A G T C A C G T A T C G A C G T G A T C A T G C
A C G T A C G T A C G T A C G T A C G T T C G A A G T C C G A T C G A T A G T C A G T C A C G T T A C G G A C T A C G T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CGGRACCTTTCTGTCC
-VAGRACAKNCTGTBC
 A G T C A C T G C T A G C T A G C T G A G A T C A G T C A C G T A C G T C A G T A G T C A C G T A T C G A C G T G A T C A T G C
A C G T T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CGGRACCTTTCTGTCC
-VAGRACAKWCTGTYC
 A G T C A C T G C T A G C T A G C T G A G A T C A G T C A C G T A C G T C A G T A G T C A C G T A T C G A C G T G A T C A T G C
A C G T T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CGGRACCTTTCTGTCC
-AAGAACATWHTGTTC
 A G T C A C T G C T A G C T A G C T G A G A T C A G T C A C G T A C G T C A G T A G T C A C G T A T C G A C G T G A T C A T G C
A C G T C G T A C T G A C T A G C G T A C G T A A G T C C G T A C A G T G C A T G T C A C G A T A C T G A C G T G C A T G A T C

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CGGRACCTTTCTGTCC--
--AGNACAGNCTGTTCTN
 A G T C A C T G C T A G C T A G C T G A G A T C A G T C A C G T A C G T C A G T A G T C A C G T A T C G A C G T G A T C A T G C A C G T A C G T
A C G T A C G T C T G A C T A G T C G A C G T A A T G C C G T A A T C G C G A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T A G C T

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CGGRACCTTTCTGTCC-
-NAGNACANNNTGTNCT
 A G T C A C T G C T A G C T A G C T G A G A T C A G T C A C G T A C G T C A G T A G T C A C G T A T C G A C G T G A T C A T G C A C G T
A C G T T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CGGRACCTTTCTGTCC
----CACTTCCTGT--
 A G T C A C T G C T A G C T A G C T G A G A T C A G T C A C G T A C G T C A G T A G T C A C G T A T C G A C G T G A T C A T G C
A C G T A C G T A C G T A C G T A G T C T C G A A G T C C G A T A C G T A G T C A G T C A C G T A T C G A G C T A C G T A C G T

NR3C2/MA0727.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CGGRACCTTTCTGTCC--
-GGGAACATTGTGTTCCC
 A G T C A C T G C T A G C T A G C T G A G A T C A G T C A C G T A C G T C A G T A G T C A C G T A T C G A C G T G A T C A T G C A C G T A C G T
A C G T C A T G T C A G C T A G C G T A C T G A A T G C C T G A G A C T G C A T C T A G G A C T A T C G A C G T G C A T G T A C G A T C G T A C

NR3C1/MA0113.3/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CGGRACCTTTCTGTCC--
-NGGAACATNATGTACCC
 A G T C A C T G C T A G C T A G C T G A G A T C A G T C A C G T A C G T C A G T A G T C A C G T A T C G A C G T G A T C A T G C A C G T A C G T
A C G T C A T G C T A G C T A G C G T A T G C A T A G C C T G A G A C T G C A T C T G A G A C T A T C G G C A T G C T A G A T C G A T C G A T C