Information for 11-AAGGGATTTT (Motif 12)

C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T
Reverse Opposite:
C G T A C G T A C G T A C G T A A C G T A G T C A G T C A G T C A C G T A C G T
p-value:1e-5
log p-value:-1.303e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.0 +/- 25.2bp
Average Position of motif in Background51.3 +/- 21.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:AAGGGATTTT
-NGGGATTA-
 C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AAGGGATTTT--
--GGGAATTTCC
 C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

PH0126.1_Obox6/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AAGGGATTTT--
AAAAACGGATTATTG
 A C G T A C G T A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
G T C A G C T A C T G A G C T A C T A G T A G C C T A G A C T G G T C A A C G T G A C T C G T A C G A T G A C T A T C G

Gfi1/MA0038.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AAGGGATTTT
CNGTGATTTN
 C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T
A T G C C G T A A T C G C G A T A C T G G C T A A C G T A C G T A C G T C T A G

PH0138.1_Pitx2/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AAGGGATTTT-----
TGAAGGGATTAATCATC
 A C G T A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PH0130.1_Otx2/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AAGGGATTTT-----
TGTAGGGATTAATTGTC
 A C G T A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AAGGGATTTT-----
AGAGGGGATTAATTTAT
 A C G T A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

RELA/MA0107.1/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AAGGGATTTT--
--GGGAATTTCC
 C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

MF0003.1_REL_class/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AAGGGATTTT--
--GGGGATTTCC
 C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

PH0137.1_Pitx1/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AAGGGATTTT----
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T C G T A C G T A A C T G A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T