Information for 4-GAAATCCCCT (Motif 7)

A T C G C G T A C G T A C G T A C G A T A G T C A G T C G T A C A G T C C G A T
Reverse Opposite:
C G T A A C T G A C T G A C T G T C A G C G T A A C G T A C G T G C A T A T G C
p-value:1e-13
log p-value:-3.088e+01
Information Content per bp:1.860
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.79%
Number of Background Sequences with motif27.7
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets50.1 +/- 32.0bp
Average Position of motif in Background43.3 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-GAAATCCCCT
GGAAATCCCC-
 A C G T A T C G C G T A C G T A C G T A C G A T A G T C A G T C G T A C A G T C C G A T
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--GAAATCCCCT
GGGAAATCCCCN
 A C G T A C G T A T C G C G T A C G T A C G T A C G A T A G T C A G T C G T A C A G T C C G A T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-GAAATCCCCT
GGAAATTCCC-
 A C G T A T C G C G T A C G T A C G T A C G A T A G T C A G T C G T A C A G T C C G A T
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:4
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-GAAATCCCCT
GGAAATTCCC-
 A C G T A T C G C G T A C G T A C G T A C G A T A G T C A G T C G T A C A G T C C G A T
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T

REL/MA0101.1/Jaspar

Match Rank:5
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-GAAATCCCCT
GGAAANCCCC-
 A C G T A T C G C G T A C G T A C G T A C G A T A G T C A G T C G T A C A G T C C G A T
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:6
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---GAAATCCCCT
AGGGGATTCCCCT
 A C G T A C G T A C G T A T C G C G T A C G T A C G T A C G A T A G T C A G T C G T A C A G T C C G A T
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GAAATCCCCT
AGGGGAATCCCCT
 A C G T A C G T A C G T A T C G C G T A C G T A C G T A C G A T A G T C A G T C G T A C A G T C C G A T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:8
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---GAAATCCCCT
GGGGGAATCCCC-
 A C G T A C G T A C G T A T C G C G T A C G T A C G T A C G A T A G T C A G T C G T A C A G T C C G A T
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GAAATCCCCT
-TAATCCCN-
 A T C G C G T A C G T A C G T A C G A T A G T C A G T C G T A C A G T C C G A T
A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T

Crx/MA0467.1/Jaspar

Match Rank:10
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GAAATCCCCT-
CTAATCCTCTT
 A T C G C G T A C G T A C G T A C G A T A G T C A G T C G T A C A G T C C G A T A C G T
G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T