Information for 22-TTGATGGCCTAAT (Motif 40)

A C G T A C G T A C T G C G T A A C G T A C T G A T C G A G T C A G T C A C G T C T G A G T C A A G C T
Reverse Opposite:
C T G A A C G T A G C T C G T A A C T G A C T G A T G C A G T C C G T A A C G T A G T C C G T A C G T A
p-value:1e-8
log p-value:-2.007e+01
Information Content per bp:1.934
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.5 +/- 21.3bp
Average Position of motif in Background6.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTGATGGCCTAAT
GTTAATGGCC----
 A C G T A C G T A C G T A C T G C G T A A C G T A C T G A T C G A G T C A G T C A C G T C T G A G T C A A G C T
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T

PH0166.1_Six6_2/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TTGATGGCCTAAT
AATNTTGATACCCTATN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A T C G A G T C A G T C A C G T C T G A G T C A A G C T
T G C A C T G A C G A T C T G A C G A T C G A T C A T G C G T A G A C T G T C A A G T C G A T C G A T C A G C T G C T A G C A T G A C T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTGATGGCCTAAT
TGATTTATGGCC----
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A T C G A G T C A G T C A C G T C T G A G T C A A G C T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C A C G T A C G T A C G T A C G T

PH0014.1_Cphx/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TTGATGGCCTAAT
NTTGATTNNATCAN
 A C G T A C G T A C G T A C T G C G T A A C G T A C T G A T C G A G T C A G T C A C G T C T G A G T C A A G C T
C G A T A G C T C G A T C T A G C G T A A C G T A C G T A T G C T A C G G T C A A C G T A G T C C G T A G A C T

PH0165.1_Six6_1/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTGATGGCCTAAT
ANANNTGATACCCTATN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A T C G A G T C A G T C A C G T C T G A G T C A A G C T
T G C A C G A T C G T A G C T A C A G T G C A T C A T G C G T A A G C T G T C A A G T C T A G C A G T C A G C T G C T A C G A T G A C T

PH0073.1_Hoxc9/Jaspar

Match Rank:6
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTGATGGCCTAAT
NNAATTAATGACCNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A T C G A G T C A G T C A C G T C T G A G T C A A G C T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C A C G T

BATF3/MA0835.1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TTGATGGCCTAAT--
-TGATGACGTCATCA
 A C G T A C G T A C T G C G T A A C G T A C T G A T C G A G T C A G T C A C G T C T G A G T C A A G C T A C G T A C G T
A C G T G A C T C T A G T C G A C G A T A C T G C G T A G T A C C T A G A C G T G T A C C G T A A G C T G T A C C T G A

PH0012.1_Cdx1/Jaspar

Match Rank:8
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTGATGGCCTAAT
NAATTTTATTACCTNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A T C G A G T C A G T C A C G T C T G A G T C A A G C T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A A C G T

PB0059.1_Six6_1/Jaspar

Match Rank:9
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----TTGATGGCCTAAT
ANANNTGATACCCNATN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C G T A C T G A T C G A G T C A G T C A C G T C T G A G T C A A G C T
C T G A C G A T C G T A G C A T C T G A G A C T C T A G C G T A A G C T G T C A A G T C G T A C A G T C A G C T G C T A C G A T G A C T

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTGATGGCCTAAT
TTTTATGGCTN---
 A C G T A C G T A C G T A C T G C G T A A C G T A C T G A T C G A G T C A G T C A C G T C T G A G T C A A G C T
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T A C G T