Information for 9-AACAGCTCAA (Motif 9)

G C T A G C T A A G T C C G T A C A T G G T A C C G A T A G T C C G T A G C T A
Reverse Opposite:
C G A T G C A T T C A G G C T A C A T G G T A C G C A T T C A G C G A T C G A T
p-value:1e-10
log p-value:-2.484e+01
Information Content per bp:1.534
Number of Target Sequences with motif26.0
Percentage of Target Sequences with motif3.25%
Number of Background Sequences with motif292.2
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets46.7 +/- 25.4bp
Average Position of motif in Background49.5 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP4/MA0691.1/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AACAGCTCAA
AACAGCTGAT
 G C T A G C T A A G T C C G T A C A T G G T A C C G A T A G T C C G T A G C T A
T G C A G C T A A G T C G T C A A T C G T A G C G A C T A T C G C G T A A G C T

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AACAGCTCAA
AACAGCTG--
 G C T A G C T A A G T C C G T A C A T G G T A C C G A T A G T C C G T A G C T A
T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AACAGCTCAA
NAHCAGCTGD-
 A C G T G C T A G C T A A G T C C G T A C A T G G T A C C G A T A G T C C G T A G C T A
G T C A T G C A G C T A A G T C C G T A A C T G T G A C G C A T T C A G C A G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AACAGCTCAA
ATCAAGGTCA-
 A C G T G C T A G C T A A G T C C G T A C A T G G T A C C G A T A G T C C G T A G C T A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AACAGCTCAA
NAACAGCTGG-
 A C G T G C T A G C T A A G T C C G T A C A T G G T A C C G A T A G T C C G T A G C T A
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AACAGCTCAA
BAACAGCTGT-
 A C G T G C T A G C T A A G T C C G T A C A T G G T A C C G A T A G T C C G T A G C T A
A C G T T C G A T C G A A G T C G T C A T A C G A T G C A C G T A C T G A G C T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AACAGCTCAA
-TRAGGTCA-
 G C T A G C T A A G T C C G T A C A T G G T A C C G A T A G T C C G T A G C T A
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AACAGCTCAA-
AACAGCTGCAG
 G C T A G C T A A G T C C G T A C A T G G T A C C G A T A G T C C G T A G C T A A C G T
T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G T A G C C G T A T A C G

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:forward strand
Alignment:AACAGCTCAA
--AAGGTCAC
 G C T A G C T A A G T C C G T A C A T G G T A C C G A T A G T C C G T A G C T A
A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

Rhox11/MA0629.1/Jaspar

Match Rank:10
Score:0.59
Offset:-6
Orientation:reverse strand
Alignment:------AACAGCTCAA-
TCNNTTTACAGCGNNNT
 A C G T A C G T A C G T A C G T A C G T A C G T G C T A G C T A A G T C C G T A C A T G G T A C C G A T A G T C C G T A G C T A A C G T
C G A T A G T C A T C G G A T C C G A T C G A T C G A T C G T A G A T C G C T A A T C G A G T C C T A G A C G T G T A C A C G T G C A T