Information for 3-GCYTCTAGYTGGRAGT (Motif 3)

C T A G G T A C G A C T C A G T A T G C C A G T C T G A A T C G G A T C A C G T C A T G A C T G T C A G C T G A A T C G A C G T
Reverse Opposite:
G T C A T A G C G A C T A G T C G T A C G T A C C G T A C T A G A T G C G A C T G T C A A T C G G C T A C T G A C A T G A G T C
p-value:1e-16
log p-value:-3.715e+01
Information Content per bp:1.707
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.0 +/- 28.1bp
Average Position of motif in Background42.2 +/- 13.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCYTCTAGYTGGRAGT--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T C T A G G T A C G A C T C A G T A T G C C A G T C T G A A T C G G A T C A C G T C A T G A C T G T C A G C T G A A T C G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GCYTCTAGYTGGRAGT-
TGGCCACCAGGGGGCGCTA
 A C G T A C G T C T A G G T A C G A C T C A G T A T G C C A G T C T G A A T C G G A T C A C G T C A T G A C T G T C A G C T G A A T C G A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.51
Offset:8
Orientation:forward strand
Alignment:GCYTCTAGYTGGRAGT
--------TTGGCA--
 C T A G G T A C G A C T C A G T A T G C C A G T C T G A A T C G G A T C A C G T C A T G A C T G T C A G C T G A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-GCYTCTAGYTGGRAGT
GGCCYCCTGCTGDGH--
 A C G T C T A G G T A C G A C T C A G T A T G C C A G T C T G A A T C G G A T C A C G T C A T G A C T G T C A G C T G A A T C G A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:5
Score:0.50
Offset:9
Orientation:reverse strand
Alignment:GCYTCTAGYTGGRAGT---
---------TGGCAGTTGN
 C T A G G T A C G A C T C A G T A T G C C A G T C T G A A T C G G A T C A C G T C A T G A C T G T C A G C T G A A T C G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer

Match Rank:6
Score:0.49
Offset:6
Orientation:forward strand
Alignment:GCYTCTAGYTGGRAGT
------ACVAGGAAGT
 C T A G G T A C G A C T C A G T A T G C C A G T C T G A A T C G G A T C A C G T C A T G A C T G T C A G C T G A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C T A C G T G C A A T C G T C A G G C T A T C G A T C A G A G C T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:GCYTCTAGYTGGRAGT
------GGTTGGCAT-
 C T A G G T A C G A C T C A G T A T G C C A G T C T G A A T C G G A T C A C G T C A T G A C T G T C A G C T G A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:8
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:GCYTCTAGYTGGRAGT-----
----NNNATTGGGGGTNTCCT
 C T A G G T A C G A C T C A G T A T G C C A G T C T G A A T C G G A T C A C G T C A T G A C T G T C A G C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G C T A G C T A G C T A C G A T C G A T A C T G A C T G A C T G C A T G A C T G A G C T G T A C G C A T G T A C G T A C G C A T

PB0149.1_Myb_2/Jaspar

Match Rank:9
Score:0.48
Offset:6
Orientation:reverse strand
Alignment:GCYTCTAGYTGGRAGT------
------NNNTGGCAGTTGGTNN
 C T A G G T A C G A C T C A G T A T G C C A G T C T G A A T C G G A T C A C G T C A T G A C T G T C A G C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.48
Offset:7
Orientation:reverse strand
Alignment:GCYTCTAGYTGGRAGT
-------NTTGGCANN
 C T A G G T A C G A C T C A G T A T G C C A G T C T G A A T C G G A T C A C G T C A T G A C T G T C A G C T G A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G