Information for 4-GGCAGGCAGGCAGSGA (Motif 4)

A C T G C A T G A G T C G T C A A C T G C A T G A T G C G T C A C T A G A C T G G T A C G T C A A C T G T A G C T A C G C T G A
Reverse Opposite:
A G C T A T G C A T C G A G T C C A G T A C T G G T A C A G T C A C G T T A C G G A T C G T A C A C G T A C T G G A T C A G T C
p-value:1e-13
log p-value:-3.035e+01
Information Content per bp:1.719
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif2.99%
Number of Background Sequences with motif30.4
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets44.4 +/- 24.1bp
Average Position of motif in Background56.1 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GGCAGGCAGGCAGSGA
TGGCAGNCTGCCAG---
 A C G T A C T G C A T G A G T C G T C A A C T G C A T G A T G C G T C A C T A G A C T G G T A C G T C A A C T G T A G C T A C G C T G A
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GGCAGGCAGGCAGSGA
-SCAGYCADGCATGAC
 A C T G C A T G A G T C G T C A A C T G C A T G A T G C G T C A C T A G A C T G G T A C G T C A A C T G T A G C T A C G C T G A
A C G T A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGCAGGCAGGCAGSGA--
GGAAGGAAGGAAGGAAGG
 A C T G C A T G A G T C G T C A A C T G C A T G A T G C G T C A C T A G A C T G G T A C G T C A A C T G T A G C T A C G C T G A A C G T A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GGCAGGCAGGCAGSGA
TTGGCANNNTGCCAAG--
 A C G T A C G T A C T G C A T G A G T C G T C A A C T G C A T G A T G C G T C A C T A G A C T G G T A C G T C A A C T G T A G C T A C G C T G A
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.51
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGGCAGGCAGSGA
TNNGGGCAG-----------
 A C G T A C G T A C G T A C G T A C T G C A T G A G T C G T C A A C T G C A T G A T G C G T C A C T A G A C T G G T A C G T C A A C T G T A G C T A C G C T G A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.49
Offset:2
Orientation:forward strand
Alignment:GGCAGGCAGGCAGSGA
--AAGGCAAGTGT---
 A C T G C A T G A G T C G T C A A C T G C A T G A T G C G T C A C T A G A C T G G T A C G T C A A C T G T A G C T A C G C T G A
A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGGCAGGCAGSGA
NGTGGGCAT-----------
 A C G T A C G T A C G T A C G T A C T G C A T G A G T C G T C A A C T G C A T G A T G C G T C A C T A G A C T G G T A C G T C A A C T G T A G C T A C G C T G A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:8
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-GGCAGGCAGGCAGSGA
TBGCACGCAA-------
 A C G T A C T G C A T G A G T C G T C A A C T G C A T G A T G C G T C A C T A G A C T G G T A C G T C A A C T G T A G C T A C G C T G A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GGCAGGCAGGCAGSGA-
-GCAGCCAAGCGTGACN
 A C T G C A T G A G T C G T C A A C T G C A T G A T G C G T C A C T A G A C T G G T A C G T C A A C T G T A G C T A C G C T G A A C G T
A C G T A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:10
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-GGCAGGCAGGCAGSGA
TGGCACCATGCCAA---
 A C G T A C T G C A T G A G T C G T C A A C T G C A T G A T G C G T C A C T A G A C T G G T A C G T C A A C T G T A G C T A C G C T G A
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T A C G T A C G T