Information for 13-TAGTCACGCSRAG (Motif 21)

A G C T G T C A C T A G C G A T T A G C T G C A A T G C C T A G G T A C T A C G C T A G C T G A A T C G
Reverse Opposite:
A T G C G A C T G A T C A T G C A C T G G A T C A T C G A C G T A T C G G C T A A G T C C A G T C T G A
p-value:1e-7
log p-value:-1.768e+01
Information Content per bp:1.637
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif3.07%
Number of Background Sequences with motif403.2
Percentage of Background Sequences with motif0.85%
Average Position of motif in Targets39.9 +/- 27.9bp
Average Position of motif in Background49.6 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax2/MA0067.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TAGTCACGCSRAG
-AGTCACGC----
 A G C T G T C A C T A G C G A T T A G C T G C A A T G C C T A G G T A C T A C G C T A G C T G A A T C G
A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:TAGTCACGCSRAG
----CACGCA---
 A G C T G T C A C T A G C G A T T A G C T G C A A T G C C T A G G T A C T A C G C T A G C T G A A T C G
A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T

Mitf/MA0620.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TAGTCACGCSRAG
-GGTCACGTGG--
 A G C T G T C A C T A G C G A T T A G C T G C A A T G C C T A G G T A C T A C G C T A G C T G A A T C G
A C G T C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TAGTCACGCSRAG
-TBGCACGCAA--
 A G C T G T C A C T A G C G A T T A G C T G C A A T G C C T A G G T A C T A C G C T A G C T G A A T C G
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:5
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TAGTCACGCSRAG
NNAATTAGTCACGGT---
 A C G T A C G T A C G T A C G T A C G T A G C T G T C A C T A G C G A T T A G C T G C A A T G C C T A G G T A C T A C G C T A G C T G A A T C G
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T A C G T A C G T A C G T

PB0147.1_Max_2/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TAGTCACGCSRAG-
GTGCCACGCGACTG
 A G C T G T C A C T A G C G A T T A G C T G C A A T G C C T A G G T A C T A C G C T A G C T G A A T C G A C G T
A C T G A G C T A C T G G A T C A G T C C G T A A G T C T C A G G A T C A C T G T C G A T G A C C A G T C A T G

PB0199.1_Zfp161_2/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:forward strand
Alignment:TAGTCACGCSRAG---
--GCCGCGCAGTGCGT
 A G C T G T C A C T A G C G A T T A G C T G C A A T G C C T A G G T A C T A C G C T A G C T G A A T C G A C G T A C G T A C G T
A C G T A C G T C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

PB0180.1_Sp4_2/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TAGTCACGCSRAG-
NNGGCCACGCCTTTN
 A C G T A G C T G T C A C T A G C G A T T A G C T G C A A T G C C T A G G T A C T A C G C T A G C T G A A T C G A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

Arntl/MA0603.1/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TAGTCACGCSRAG
-GGTCACGTGC--
 A G C T G T C A C T A G C G A T T A G C T G C A A T G C C T A G G T A C T A C G C T A G C T G A A T C G
A C G T C A T G T C A G C A G T G T A C G C T A A G T C C T A G G A C T C A T G G A T C A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TAGTCACGCSRAG
--GGCACGCGTC-
 A G C T G T C A C T A G C G A T T A G C T G C A A T G C C T A G G T A C T A C G C T A G C T G A A T C G
A C G T A C G T T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T