Information for 11-TTGCCTATCC (Motif 12)

A C G T A C G T A C T G A G T C A G T C A G C T T G C A A G C T A T G C G A T C
Reverse Opposite:
C T A G A T C G T C G A A C G T C T G A A C T G A C T G A G T C G T C A C G T A
p-value:1e-10
log p-value:-2.353e+01
Information Content per bp:1.851
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif43.6
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets50.9 +/- 24.7bp
Average Position of motif in Background46.7 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTGCCTATCC
NNACTTGCCTT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G C T T G C A A G C T A T G C G A T C
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TTGCCTATCC
ATTTGCATAT--
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G C T T G C A A G C T A T G C G A T C
G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TTGCCTATCC
GGTGCCAAGT-
 A C G T A C G T A C G T A C T G A G T C A G T C A G C T T G C A A G C T A T G C G A T C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TTGCCTATCC
ATTTGCATAA--
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G C T T G C A A G C T A T G C G A T C
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TTGCCTATCC
TTCATTTGCATAT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G C T T G C A A G C T A T G C G A T C
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T A C G T A C G T

MF0006.1_bZIP_cEBP-like_subclass/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TTGCCTATCC
ATTGCATAA--
 A C G T A C G T A C G T A C T G A G T C A G T C A G C T T G C A A G C T A T G C G A T C
T C G A G A C T A C G T C T A G G A T C T C G A G A C T G T C A G C T A A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TTGCCTATCC
ATGCCCACC-
 A C G T A C G T A C T G A G T C A G T C A G C T T G C A A G C T A T G C G A T C
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TTGCCTATCC
CGTGCCAAG--
 A C G T A C G T A C G T A C T G A G T C A G T C A G C T T G C A A G C T A T G C G A T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TTGCCTATCC
ATGCCAACC-
 A C G T A C G T A C T G A G T C A G T C A G C T T G C A A G C T A T G C G A T C
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TTGCCTATCC
-TGCCAA---
 A C G T A C G T A C T G A G T C A G T C A G C T T G C A A G C T A T G C G A T C
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T