Information for 1-TGWTCWACACNACACT (Motif 1)

C G A T A C T G C G T A A G C T A G T C C G A T C T G A G T A C C G T A G T A C G T C A C G T A A G T C C G T A G A T C G C A T
Reverse Opposite:
C G T A C T A G A C G T C T A G C G A T A C G T C A T G A C G T C A T G G A C T C G T A C T A G C T G A C G A T A G T C C G T A
p-value:1e-13
log p-value:-3.040e+01
Information Content per bp:1.683
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif8.54%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.6 +/- 24.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TGWTCWACACNACACT-
--ATTTGCATAACAAAG
 C G A T A C T G C G T A A G C T A G T C C G A T C T G A G T A C C G T A G T A C G T C A C G T A A G T C C G T A G A T C G C A T A C G T
A C G T A C G T G T C A G A C T G A C T G C A T T C A G T G A C G C T A C G A T C T G A G C T A A T G C G T C A T C G A C G T A T C A G

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TGWTCWACACNACACT-
--ATTTGCATAACAATG
 C G A T A C T G C G T A A G C T A G T C C G A T C T G A G T A C C G T A G T A C G T C A C G T A A G T C C G T A G A T C G C A T A C G T
A C G T A C G T G C T A G C A T G A C T G C A T T C A G G T A C G C T A G C A T C T G A G C T A T A G C G C T A C T G A C G A T C T A G

PB0121.1_Foxj3_2/Jaspar

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TGWTCWACACNACACT---
--AACACCAAAACAAAGGA
 C G A T A C T G C G T A A G C T A G T C C G A T C T G A G T A C C G T A G T A C G T C A C G T A A G T C C G T A G A T C G C A T A C G T A C G T A C G T
A C G T A C G T G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0123.1_Foxl1_2/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TGWTCWACACNACACT
ATATCAAAACAAAACA
 C G A T A C T G C G T A A G C T A G T C C G A T C T G A G T A C C G T A G T A C G T C A C G T A A G T C C G T A G A T C G C A T
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

PH0017.1_Cux1_2/Jaspar

Match Rank:5
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---TGWTCWACACNACACT
TAGTGATCATCATTA----
 A C G T A C G T A C G T C G A T A C T G C G T A A G C T A G T C C G A T C T G A G T A C C G T A G T A C G T C A C G T A A G T C C G T A G A T C G C A T
G A C T G C T A C A T G A G C T C A T G G C T A C G A T G A T C C G T A C A G T G A T C T C G A A G C T A C G T G C T A A C G T A C G T A C G T A C G T

PB0090.1_Zbtb12_1/Jaspar

Match Rank:6
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----TGWTCWACACNACACT
CTAAGGTTCTAGATCAC---
 A C G T A C G T A C G T A C G T C G A T A C T G C G T A A G C T A G T C C G A T C T G A G T A C C G T A G T A C G T C A C G T A A G T C C G T A G A T C G C A T
A T G C A C G T G C T A T C G A A C T G C T A G C G A T C G A T A G T C A G C T T C G A C T A G T C G A G C A T A G T C T G C A A G T C A C G T A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-TGWTCWACACNACACT
AAGGTCAAAAGGTCAA-
 A C G T C G A T A C T G C G T A A G C T A G T C C G A T C T G A G T A C C G T A G T A C G T C A C G T A A G T C C G T A G A T C G C A T
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.50
Offset:5
Orientation:forward strand
Alignment:TGWTCWACACNACACT-
-----NWAACCACADNN
 C G A T A C T G C G T A A G C T A G T C C G A T C T G A G T A C C G T A G T A C G T C A C G T A A G T C C G T A G A T C G C A T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

PB0122.1_Foxk1_2/Jaspar

Match Rank:9
Score:0.49
Offset:2
Orientation:forward strand
Alignment:TGWTCWACACNACACT-
--CAAACAACAACACCT
 C G A T A C T G C G T A A G C T A G T C C G A T C T G A G T A C C G T A G T A C G T C A C G T A A G T C C G T A G A T C G C A T A C G T
A C G T A C G T G T A C G C T A G T C A C T G A G A T C T G C A T C G A A G T C T C G A C G T A G A T C C G T A G A T C G T A C G A C T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:10
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-TGWTCWACACNACACT
GAGGTCAAAAGGTCA--
 A C G T C G A T A C T G C G T A A G C T A G T C C G A T C T G A G T A C C G T A G T A C G T C A C G T A A G T C C G T A G A T C G C A T
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T A C G T