Information for 10-AGTGGTTTTGCCT (Motif 9)

C G T A A C T G A C G T A C T G A C T G A G C T C G A T A C G T A C G T A T C G A G T C A G T C A C G T
Reverse Opposite:
C G T A C T A G A C T G A T G C C G T A C G T A C G T A C T G A G T A C A G T C C G T A A G T C A C G T
p-value:1e-9
log p-value:-2.259e+01
Information Content per bp:1.887
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.3 +/- 27.8bp
Average Position of motif in Background46.8 +/- 20.9bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---AGTGGTTTTGCCT
TTRAGTGSYK------
 A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G C T C G A T A C G T A C G T A T C G A G T C A G T C A C G T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AGTGGTTTTGCCT
-GGGGATTTCC--
 C G T A A C T G A C G T A C T G A C T G A G C T C G A T A C G T A C G T A T C G A G T C A G T C A C G T
A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AGTGGTTTTGCCT
NNTGTGGTTT-----
 A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G C T C G A T A C G T A C G T A T C G A G T C A G T C A C G T
A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T A C G T A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGTGGTTTTGCCT
NGGGGATTTCCC-
 C G T A A C T G A C G T A C T G A C T G A G C T C G A T A C G T A C G T A T C G A G T C A G T C A C G T
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:5
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------AGTGGTTTTGCCT
AATTTCAAGTGGCTTN----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G C T C G A T A C G T A C G T A T C G A G T C A G T C A C G T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AGTGGTTTTGCCT
TTGAGTGSTT------
 A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G C T C G A T A C G T A C G T A T C G A G T C A G T C A C G T
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------AGTGGTTTTGCCT
NTNNTTAAGTGGTTANN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G C T C G A T A C G T A C G T A T C G A G T C A G T C A C G T
C T A G C A G T A C G T A T C G G C A T C G A T C T G A C T G A A C T G C G A T C T A G A T C G C G A T A G C T C G T A C G A T A C T G A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:8
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---AGTGGTTTTGCCT
TTAAGTGCTT------
 A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G C T C G A T A C G T A C G T A T C G A G T C A G T C A C G T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AGTGGTTTTGCCT
NTCAAGTGGN-------
 A C G T A C G T A C G T A C G T C G T A A C T G A C G T A C T G A C T G A G C T C G A T A C G T A C G T A T C G A G T C A G T C A C G T
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AGTGGTTTTGCCT
-GGGGATTTCC--
 C G T A A C T G A C G T A C T G A C T G A G C T C G A T A C G T A C G T A T C G A G T C A G T C A C G T
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T