Information for 3-YCCCGGCMAAGGTGAC (Motif 6)

A G C T A G T C G T A C A G T C C T A G T A C G A G T C G T A C T C G A G T C A A C T G A T C G A C G T A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C C G T A A T G C A G T C A C G T A G C T A C T G A C T G A T G C A G T C C T A G A C T G A C T G C T G A
p-value:1e-13
log p-value:-3.086e+01
Information Content per bp:1.819
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.70%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.2 +/- 25.2bp
Average Position of motif in Background57.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ESR2/MA0258.2/Jaspar

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:YCCCGGCMAAGGTGAC--
---AGGNCANNGTGACCT
 A G C T A G T C G T A C A G T C C T A G T A C G A G T C G T A C T C G A G T C A A C T G A T C G A C G T A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T C T G A C T A G C T A G C A G T A G T C C G T A A T C G A C T G T A C G G C A T T A C G T G C A G A T C G T A C G A C T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.58
Offset:6
Orientation:forward strand
Alignment:YCCCGGCMAAGGTGAC
------CAAAGGTCAG
 A G C T A G T C G T A C A G T C C T A G T A C G A G T C G T A C T C G A G T C A A C T G A T C G A C G T A C T G C G T A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:YCCCGGCMAAGGTGAC---
----GGTCANNGTGACCTN
 A G C T A G T C G T A C A G T C C T A G T A C G A G T C G T A C T C G A G T C A A C T G A T C G A C G T A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:YCCCGGCMAAGGTGAC
------TCAAGGTCAN
 A G C T A G T C G T A C A G T C C T A G T A C G A G T C G T A C T C G A G T C A A C T G A T C G A C G T A C T G C G T A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:YCCCGGCMAAGGTGAC---
---TCTCAAAGGTCACCTG
 A G C T A G T C G T A C A G T C C T A G T A C G A G T C G T A C T C G A G T C A A C T G A T C G A C G T A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C G T A C G T C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.56
Offset:9
Orientation:forward strand
Alignment:YCCCGGCMAAGGTGAC-
---------AGGTGTCA
 A G C T A G T C G T A C A G T C C T A G T A C G A G T C G T A C T C G A G T C A A C T G A T C G A C G T A C T G C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.55
Offset:8
Orientation:forward strand
Alignment:YCCCGGCMAAGGTGAC
--------AAGGTCAC
 A G C T A G T C G T A C A G T C C T A G T A C G A G T C G T A C T C G A G T C A A C T G A T C G A C G T A C T G C G T A A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

PB0117.1_Eomes_2/Jaspar

Match Rank:8
Score:0.55
Offset:5
Orientation:forward strand
Alignment:YCCCGGCMAAGGTGAC-----
-----GCGGAGGTGTCGCCTC
 A G C T A G T C G T A C A G T C C T A G T A C G A G T C G T A C T C G A G T C A A C T G A T C G A C G T A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:YCCCGGCMAAGGTGAC
--TCAGNGAGCGTGAC
 A G C T A G T C G T A C A G T C C T A G T A C G A G T C G T A C T C G A G T C A A C T G A T C G A C G T A C T G C G T A A G T C
A C G T A C G T A C G T T A G C T C G A A T C G T A C G T C A G C T G A A T C G A G T C C T A G G A C T C T A G C T G A T G A C

Atf3/MA0605.1/Jaspar

Match Rank:10
Score:0.55
Offset:10
Orientation:forward strand
Alignment:YCCCGGCMAAGGTGAC--
----------GATGACGT
 A G C T A G T C G T A C A G T C C T A G T A C G A G T C G T A C T C G A G T C A A C T G A T C G A C G T A C T G C G T A A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T G A A C G T A C T G C G T A A G T C C T A G G A C T