Information for 2-AGYGMCMCCTRGTGGN (Motif 2)

C T G A A T C G G A T C A C T G G T C A A G T C G T C A A G T C A G T C A G C T T C A G A T C G G A C T A C T G C A T G G C A T
Reverse Opposite:
C G T A G T A C A G T C C T G A A T G C A G T C T C G A A C T G C T A G A C G T A C T G A C G T T G A C C T A G T A G C G A C T
p-value:1e-39
log p-value:-9.006e+01
Information Content per bp:1.661
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif4.42%
Number of Background Sequences with motif84.2
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets54.6 +/- 28.1bp
Average Position of motif in Background51.1 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-AGYGMCMCCTRGTGGN--
TAGCGCCCCCTGGTGGCCA
 A C G T C T G A A T C G G A T C A C T G G T C A A G T C G T C A A G T C A G T C A G C T T C A G A T C G G A C T A C T G C A T G G C A T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--AGYGMCMCCTRGTGGN--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T C T G A A T C G G A T C A C T G G T C A A G T C G T C A A G T C A G T C A G C T T C A G A T C G G A C T A C T G C A T G G C A T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.87
Offset:-4
Orientation:forward strand
Alignment:----AGYGMCMCCTRGTGGN
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T C T G A A T C G G A T C A C T G G T C A A G T C G T C A A G T C A G T C A G C T T C A G A T C G G A C T A C T G C A T G G C A T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

PB0117.1_Eomes_2/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGYGMCMCCTRGTGGN
NNGGCGACACCTCNNN--
 A C G T A C G T C T G A A T C G G A T C A C T G G T C A A G T C G T C A A G T C A G T C A G C T T C A G A T C G G A C T A C T G C A T G G C A T
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C A C G T A C G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AGYGMCMCCTRGTGGN
--TGACACCT------
 C T G A A T C G G A T C A C T G G T C A A G T C G T C A A G T C A G T C A G C T T C A G A T C G G A C T A C T G C A T G G C A T
A C G T A C G T G A C T T C A G C T G A A G T C C T G A T A G C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T

PB0101.1_Zic1_1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AGYGMCMCCTRGTGGN-
---CCCCCCCGGGGGNN
 C T G A A T C G G A T C A C T G G T C A A G T C G T C A A G T C A G T C A G C T T C A G A T C G G A C T A C T G C A T G G C A T A C G T
A C G T A C G T A C G T T A G C T G A C G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G C A G T T A C G

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AGYGMCMCCTRGTGGN
---NNCACCTGNN---
 C T G A A T C G G A T C A C T G G T C A A G T C G T C A A G T C A G T C A G C T T C A G A T C G G A C T A C T G C A T G G C A T
A C G T A C G T A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T A C G T

FIGLA/MA0820.1/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGYGMCMCCTRGTGGN
---ACCACCTGTT---
 C T G A A T C G G A T C A C T G G T C A A G T C G T C A A G T C A G T C A G C T T C A G A T C G G A C T A C T G C A T G G C A T
A C G T A C G T A C G T G C T A G T A C A G T C G T C A A T G C T A G C C G A T C A T G A C G T C G A T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGYGMCMCCTRGTGGN-
--GGCCYCCTGCTGDGH
 C T G A A T C G G A T C A C T G G T C A A G T C G T C A A G T C A G T C A G C T T C A G A T C G G A C T A C T G C A T G G C A T A C G T
A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:AGYGMCMCCTRGTGGN
----CCCCCTGCTGTG
 C T G A A T C G G A T C A C T G G T C A A G T C G T C A A G T C A G T C A G C T T C A G A T C G G A C T A C T G C A T G G C A T
A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G