Information for 4-YTTGGCAAATTCCCTG (Motif 4)

A G T C G C A T A C G T A T C G A T C G T G A C G T C A G T C A C G T A A G C T C G A T G A T C G A T C G A T C G C A T A C T G
Reverse Opposite:
T G A C C G T A C T A G C T A G C T A G C G T A T C G A G C A T C A G T C A G T A C T G T A G C A T G C T G C A C G T A T C A G
p-value:1e-20
log p-value:-4.802e+01
Information Content per bp:1.590
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif4.74%
Number of Background Sequences with motif316.7
Percentage of Background Sequences with motif0.66%
Average Position of motif in Targets50.2 +/- 23.0bp
Average Position of motif in Background51.1 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:YTTGGCAAATTCCCTG
---GGGAAATCCCCN-
 A G T C G C A T A C G T A T C G A T C G T G A C G T C A G T C A C G T A A G C T C G A T G A T C G A T C G A T C G C A T A C T G
A C G T A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:YTTGGCAAATTCCCTG
----GGAAATTCCC--
 A G T C G C A T A C G T A T C G A T C G T G A C G T C A G T C A C G T A A G C T C G A T G A T C G A T C G A T C G C A T A C T G
A C G T A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

TEAD4/MA0809.1/Jaspar

Match Rank:3
Score:0.59
Offset:5
Orientation:forward strand
Alignment:YTTGGCAAATTCCCTG
-----CACATTCCAT-
 A G T C G C A T A C G T A T C G A T C G T G A C G T C A G T C A C G T A A G C T C G A T G A T C G A T C G A T C G C A T A C T G
A C G T A C G T A C G T A C G T A C G T G T A C C T G A T G A C C G T A C G A T C G A T A G T C G A T C C G T A G A C T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-YTTGGCAAATTCCCTG
NNTTGGCANN-------
 A C G T A G T C G C A T A C G T A T C G A T C G T G A C G T C A G T C A C G T A A G C T C G A T G A T C G A T C G A T C G C A T A C T G
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.58
Offset:8
Orientation:forward strand
Alignment:YTTGGCAAATTCCCTG--
--------ATTTCCTGTN
 A G T C G C A T A C G T A T C G A T C G T G A C G T C A G T C A C G T A A G C T C G A T G A T C G A T C G A T C G C A T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T A C G T A C G T A G T C A G T C A C G T A T C G G A C T A T C G

TEAD1/MA0090.2/Jaspar

Match Rank:6
Score:0.58
Offset:5
Orientation:forward strand
Alignment:YTTGGCAAATTCCCTG
-----CACATTCCAT-
 A G T C G C A T A C G T A T C G A T C G T G A C G T C A G T C A C G T A A G C T C G A T G A T C G A T C G A T C G C A T A C T G
A C G T A C G T A C G T A C G T A C G T G A T C T C G A T G A C G T C A A G C T G C A T G T A C A G T C C G T A G A C T A C G T

RELA/MA0107.1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:YTTGGCAAATTCCCTG
----GGAAATTCCC--
 A G T C G C A T A C G T A T C G A T C G T G A C G T C A G T C A C G T A A G C T C G A T G A T C G A T C G A T C G C A T A C T G
A C G T A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:YTTGGCAAATTCCCTG
CTTGGCAA--------
 A G T C G C A T A C G T A T C G A T C G T G A C G T C A G T C A C G T A A G C T C G A T G A T C G A T C G A T C G C A T A C T G
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:YTTGGCAAATTCCCTG
------GCATTCCAGN
 A G T C G C A T A C G T A T C G A T C G T G A C G T C A G T C A C G T A A G C T C G A T G A T C G A T C G A T C G C A T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T G A C C G T A A C G T A C G T A G T C A G T C C G T A C A T G C T A G

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:10
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:YTTGGCAAATTCCCTG
------RCATTCCWGG
 A G T C G C A T A C G T A T C G A T C G T G A C G T C A G T C A C G T A A G C T C G A T G A T C G A T C G A T C G C A T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T G A C C G T A C G A T C G A T A G T C G T A C C G T A A T C G A T C G