Information for 16-TGCCTGGCACCAN (Motif 21)

C A G T A C T G A G T C A G T C A C G T A C T G A C T G T A G C C G T A A G T C A G T C C T G A C G T A
Reverse Opposite:
A C G T A G C T A C T G A C T G G A C T A C T G A G T C A G T C C G T A A C T G A C T G G T A C G T C A
p-value:1e-10
log p-value:-2.505e+01
Information Content per bp:1.847
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.19%
Number of Background Sequences with motif22.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets60.8 +/- 23.1bp
Average Position of motif in Background54.4 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGCCTGGCACCAN
CTGTCTGTCACCT-
 A C G T C A G T A C T G A G T C A G T C A C G T A C T G A C T G T A G C C G T A A G T C A G T C C T G A C G T A
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TGCCTGGCACCAN
TGTCTGDCACCT-
 C A G T A C T G A G T C A G T C A C G T A C T G A C T G T A G C C G T A A G T C A G T C C T G A C G T A
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TGCCTGGCACCAN
--CTTGGCAA---
 C A G T A C T G A G T C A G T C A C G T A C T G A C T G T A G C C G T A A G T C A G T C C T G A C G T A
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TGCCTGGCACCAN
-SCCTAGCAACAG
 C A G T A C T G A G T C A G T C A C G T A C T G A C T G T A G C C G T A A G T C A G T C C T G A C G T A
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TGCCTGGCACCAN
--NTTGGCANN--
 C A G T A C T G A G T C A G T C A C G T A C T G A C T G T A G C C G T A A G T C A G T C C T G A C G T A
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TGCCTGGCACCAN
TGTTKCCTAGCAACM-
 A C G T A C G T A C G T C A G T A C T G A G T C A G T C A C G T A C T G A C T G T A G C C G T A A G T C A G T C C T G A C G T A
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:TGCCTGGCACCAN-
--SCTGTCARCACC
 C A G T A C T G A G T C A G T C A C G T A C T G A C T G T A G C C G T A A G T C A G T C C T G A C G T A A C G T
A C G T A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TGCCTGGCACCAN
-VGCTGWCAVB--
 C A G T A C T G A G T C A G T C A C G T A C T G A C T G T A G C C G T A A G T C A G T C C T G A C G T A
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGCCTGGCACCAN
-GGTTGGCAT---
 C A G T A C T G A G T C A G T C A C G T A C T G A C T G T A G C C G T A A G T C A G T C C T G A C G T A
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:forward strand
Alignment:TGCCTGGCACCAN
---TTGGCA----
 C A G T A C T G A G T C A G T C A C G T A C T G A C T G T A G C C G T A A G T C A G T C C T G A C G T A
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T