Information for 15-AAGTAGGTCATAT (Motif 20)

G T C A C G T A C T A G C G A T C T G A A C T G A T C G C G A T A T G C G T C A A G C T C T G A C G A T
Reverse Opposite:
C G T A G A C T C T G A A C G T A T C G C G T A T A G C A G T C G A C T C G T A G A T C C G A T A C G T
p-value:1e-11
log p-value:-2.589e+01
Information Content per bp:1.681
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif2.97%
Number of Background Sequences with motif246.8
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets51.8 +/- 25.6bp
Average Position of motif in Background51.4 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:forward strand
Alignment:AAGTAGGTCATAT
AAYTAGGTCA---
 G T C A C G T A C T A G C G A T C T G A A C T G A T C G C G A T A T G C G T C A A G C T C T G A C G A T
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---AAGTAGGTCATAT
TATAAGTAGGTCAA--
 A C G T A C G T A C G T G T C A C G T A C T A G C G A T C T G A A C T G A T C G C G A T A T G C G T C A A G C T C T G A C G A T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:AAGTAGGTCATAT
ATCAAGGTCA---
 G T C A C G T A C T A G C G A T C T G A A C T G A T C G C G A T A T G C G T C A A G C T C T G A C G A T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:AAGTAGGTCATAT
----AGGTCA---
 G T C A C G T A C T A G C G A T C T G A A C T G A T C G C G A T A T G C G T C A A G C T C T G A C G A T
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAGTAGGTCATAT
--TRAGGTCA---
 G T C A C G T A C T A G C G A T C T G A A C T G A T C G C G A T A T G C G T C A A G C T C T G A C G A T
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AAGTAGGTCATAT
--AGRGGTCA---
 G T C A C G T A C T A G C G A T C T G A A C T G A T C G C G A T A T G C G T C A A G C T C T G A C G A T
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:forward strand
Alignment:AAGTAGGTCATAT
---AAGGTCAC--
 G T C A C G T A C T A G C G A T C T G A A C T G A T C G C G A T A T G C G T C A A G C T C T G A C G A T
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAGTAGGTCATAT-
TCTCAAAGGTCACGAG
 A C G T A C G T G T C A C G T A C T A G C G A T C T G A A C T G A T C G C G A T A T G C G T C A A G C T C T G A C G A T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Crem/MA0609.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AAGTAGGTCATAT
--TTACGTCATN-
 G T C A C G T A C T A G C G A T C T G A A C T G A T C G C G A T A T G C G T C A A G C T C T G A C G A T
A C G T A C G T A C G T A C G T C G T A A G T C A C T G A C G T G T A C C G T A A G C T G T C A A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AAGTAGGTCATAT-
TCTCAAAGGTCACCTG
 A C G T A C G T G T C A C G T A C T A G C G A T C T G A A C T G A T C G C G A T A T G C G T C A A G C T C T G A C G A T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G