Information for 13-CATCAACTCCTAG (Motif 17)

A G T C C G T A A C G T A T G C C G T A C G T A A G T C A C G T A G T C A G T C C G A T C G T A A C T G
Reverse Opposite:
A G T C A C G T C G T A A C T G C T A G C G T A A C T G A C G T A C G T A T C G C G T A A C G T T A C G
p-value:1e-11
log p-value:-2.674e+01
Information Content per bp:1.921
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.7 +/- 23.9bp
Average Position of motif in Background35.4 +/- 12.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0181.1_Spdef_2/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CATCAACTCCTAG---
GATAACATCCTAGTAG
 A G T C C G T A A C G T A T G C C G T A C G T A A G T C A C G T A G T C A G T C C G A T C G T A A C T G A C G T A C G T A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

BCL6B/MA0731.1/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CATCAACTCCTAG------
--TGAATTCCTAGAAAGCA
 A G T C C G T A A C G T A T G C C G T A C G T A A G T C A C G T A G T C A G T C C G A T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C T G C T G A C T G A A C G T A G C T A G T C A G T C A C G T T G C A A C T G G T C A C G T A C G T A C T A G G A T C C T G A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CATCAACTCCTAG
-ATTAACACCT--
 A G T C C G T A A C G T A T G C C G T A C G T A A G T C A C G T A G T C A G T C C G A T C G T A A C T G
A C G T G C T A G A C T G A C T T G C A C G T A A G T C C G T A T A G C G A T C G A C T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CATCAACTCCTAG
GGCCATTAAC------
 A C G T A C G T A C G T A G T C C G T A A C G T A T G C C G T A C G T A A G T C A C G T A G T C A G T C C G A T C G T A A C T G
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:5
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CATCAACTCCTAG--
CGACCAACTGCCATGC
 A C G T A G T C C G T A A C G T A T G C C G T A C G T A A G T C A C G T A G T C A G T C C G A T C G T A A C T G A C G T A C G T
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.51
Offset:-5
Orientation:forward strand
Alignment:-----CATCAACTCCTAG
TCACCCATCAATAAACA-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A T G C C G T A C G T A A G T C A C G T A G T C A G T C C G A T C G T A A C T G
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A A C G T

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:7
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CATCAACTCCTAG-----
RACTACAACTCCCAGVAKGC
 A C G T A C G T A G T C C G T A A C G T A T G C C G T A C G T A A G T C A C G T A G T C A G T C C G A T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C

PB0117.1_Eomes_2/Jaspar

Match Rank:8
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CATCAACTCCTAG--
NNGGCGACACCTCNNN
 A C G T A G T C C G T A A C G T A T G C C G T A C G T A A G T C A C G T A G T C A G T C C G A T C G T A A C T G A C G T A C G T
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C

Myb/MA0100.2/Jaspar

Match Rank:9
Score:0.50
Offset:2
Orientation:forward strand
Alignment:CATCAACTCCTAG
--CCAACTGCCA-
 A G T C C G T A A C G T A T G C C G T A C G T A A G T C A C G T A G T C A G T C C G A T C G T A A C T G
A C G T A C G T A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:10
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:CATCAACTCCTAG
--CCAACTGCCA-
 A G T C C G T A A C G T A T G C C G T A C G T A A G T C A C G T A G T C A G T C C G A T C G T A A C T G
A C G T A C G T A G T C G A T C C G T A C G T A A G T C A C G T A C T G G A T C G A T C C T G A A C G T