Information for 5-GTCMAGAGWGCCM (Motif 7)

A C T G A C G T A G T C G T A C C T G A A T C G C T G A A C T G G C A T A C T G A T G C A G T C G T C A
Reverse Opposite:
A C G T A C T G A T C G A G T C C G T A A G T C A G C T A T G C A G C T A C T G A C T G T G C A A G T C
p-value:1e-10
log p-value:-2.467e+01
Information Content per bp:1.880
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.8 +/- 21.6bp
Average Position of motif in Background20.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GTCMAGAGWGCCM
--CTTGAGTGGCT
 A C T G A C G T A G T C G T A C C T G A A T C G C T G A A C T G G C A T A C T G A T G C A G T C G T C A
A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

SMAD3/MA0795.1/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GTCMAGAGWGCCM
CGTCTAGACA----
 A C G T A C T G A C G T A G T C G T A C C T G A A T C G C T G A A C T G G C A T A C T G A T G C A G T C G T C A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GTCMAGAGWGCCM
--CTYRAGTGSY-
 A C T G A C G T A G T C G T A C C T G A A T C G C T G A A C T G G C A T A C T G A T G C A G T C G T C A
A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GTCMAGAGWGCCM
---TTGAGTGSTT
 A C T G A C G T A G T C G T A C C T G A A T C G C T G A A C T G G C A T A C T G A T G C A G T C G T C A
A C G T A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GTCMAGAGWGCCM
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C G T A C C T G A A T C G C T G A A C T G G C A T A C T G A T G C A G T C G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:6
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GTCMAGAGWGCCM
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T A C T G A C G T A G T C G T A C C T G A A T C G C T G A A C T G G C A T A C T G A T G C A G T C G T C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.53
Offset:6
Orientation:forward strand
Alignment:GTCMAGAGWGCCM--
------CGTGCCAAG
 A C T G A C G T A G T C G T A C C T G A A T C G C T G A A C T G G C A T A C T G A T G C A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

POL006.1_BREu/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GTCMAGAGWGCCM
----AGCGCGCC-
 A C T G A C G T A G T C G T A C C T G A A T C G C T G A A C T G G C A T A C T G A T G C A G T C G T C A
A C G T A C G T A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.52
Offset:7
Orientation:forward strand
Alignment:GTCMAGAGWGCCM---
-------ATGCCCACC
 A C T G A C G T A G T C G T A C C T G A A T C G C T G A A C T G G C A T A C T G A T G C A G T C G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GTCMAGAGWGCCM
GAGGTCAAAAGGTCA-
 A C G T A C G T A C G T A C T G A C G T A G T C G T A C C T G A A T C G C T G A A C T G G C A T A C T G A T G C A G T C G T C A
T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A A C G T