Information for 6-GCAGAACACG (Motif 14)

A C T G A G T C C G T A A C T G C G T A C G T A A G T C C G T A A G T C A C T G
Reverse Opposite:
A G T C A C T G A C G T A C T G A C G T A C G T A G T C A C G T A C T G A G T C
p-value:1e-8
log p-value:-1.909e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.2 +/- 20.8bp
Average Position of motif in Background67.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0141.1_Isgf3g_2/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCAGAACACG----
GCAAAACATTACTA
 A C T G A G T C C G T A A C T G C G T A C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

CLOCK/MA0819.1/Jaspar

Match Rank:2
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GCAGAACACG----
----AACACGTGTT
 A C T G A G T C C G T A A C T G C G T A C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A T C G A G T A C T C G A G A T C C T A G A C G T A C T G A G C T G A C T

PB0121.1_Foxj3_2/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCAGAACACG---
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C T G C G T A C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

PB0120.1_Foxj1_2/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCAGAACACG--
ATGTCACAACAACAC
 A C G T A C G T A C G T A C T G A G T C C G T A A C T G C G T A C G T A A G T C C G T A A G T C A C T G A C G T A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:5
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GCAGAACACG--
------CACGCA
 A C T G A G T C C G T A A C T G C G T A C G T A A G T C C G T A A G T C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

PB0130.1_Gm397_2/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCAGAACACG-----
AGCGGCACACACGCAA
 A C G T A C T G A G T C C G T A A C T G C G T A C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:7
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GCAGAACACG---
-----GCACGTNC
 A C T G A G T C C G T A A C T G C G T A C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCAGAACACG
CCAGGAACAG-
 A C G T A C T G A G T C C G T A A C T G C G T A C G T A A G T C C G T A A G T C A C T G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T

MAX/MA0058.3/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GCAGAACACG----
----ACCACGTGCT
 A C T G A G T C C G T A A C T G C G T A C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A T G A C G T A C C T G A A G T C T C A G G A C T A C T G A T G C G A C T

Mlxip/MA0622.1/Jaspar

Match Rank:10
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GCAGAACACG---
-----ACACGTGC
 A C T G A G T C C G T A A C T G C G T A C G T A A G T C C G T A A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A A G T C C G T A A G T C A C T G A C G T A C T G T A G C