Information for 4-GGAGTGCCAG (Motif 14)

C T A G A T C G C G T A T A C G A G C T A T C G A T G C A T G C T G C A A C T G
Reverse Opposite:
A G T C A C G T A T C G A T C G A T G C T C G A A T G C C G A T A T G C A G T C
p-value:1e-8
log p-value:-2.029e+01
Information Content per bp:1.785
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif3.72%
Number of Background Sequences with motif529.1
Percentage of Background Sequences with motif1.09%
Average Position of motif in Targets48.0 +/- 22.7bp
Average Position of motif in Background51.1 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GGAGTGCCAG-
NTGATTGACAGN
 A C G T C T A G A T C G C G T A T A C G A G C T A T C G A T G C A T G C T G C A A C T G A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:GGAGTGCCAG--
TGAGTGACAGSC
 C T A G A T C G C G T A T A C G A G C T A T C G A T G C A T G C T G C A A C T G A C G T A C G T
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGAGTGCCAG-
BTGABTGACAGS
 A C G T C T A G A T C G C G T A T A C G A G C T A T C G A T G C A T G C T G C A A C T G A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GGAGTGCCAG-
---TTGCCAAG
 C T A G A T C G C G T A T A C G A G C T A T C G A T G C A T G C T G C A A C T G A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GGAGTGCCAG---
-AGGTGHCAGACA
 C T A G A T C G C G T A T A C G A G C T A T C G A T G C A T G C T G C A A C T G A C G T A C G T A C G T
A C G T C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGAGTGCCAG
BTBRAGTGSN--
 A C G T A C G T C T A G A T C G C G T A T A C G A G C T A T C G A T G C A T G C T G C A A C T G
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGAGTGCCAG
TTGAGTGSTT-
 A C G T C T A G A T C G C G T A T A C G A G C T A T C G A T G C A T G C T G C A A C T G
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GGAGTGCCAG
CTTGAGTGGCT-
 A C G T A C G T C T A G A T C G C G T A T A C G A G C T A T C G A T G C A T G C T G C A A C T G
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GGAGTGCCAG-
--CGTGCCAAG
 C T A G A T C G C G T A T A C G A G C T A T C G A T G C A T G C T G C A A C T G A C G T
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GGAGTGCCAG
CTYRAGTGSY--
 A C G T A C G T C T A G A T C G C G T A T A C G A G C T A T C G A T G C A T G C T G C A A C T G
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T