Information for 6-GGGGTCAGAGGTCAGC (Motif 6)

A T C G C T A G A C T G A C T G A G C T A G T C C G T A T C A G C T G A A C T G A C T G A C G T A G T C C G T A A T C G A T G C
Reverse Opposite:
A T C G A T G C A C G T A C T G G T C A A G T C A G T C A G C T A G T C A C G T C T A G C T G A G T A C G T A C A G T C A T G C
p-value:1e-18
log p-value:-4.366e+01
Information Content per bp:1.799
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.15%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.4 +/- 12.0bp
Average Position of motif in Background50.0 +/- 23.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR2C2/MA0504.1/Jaspar

Match Rank:1
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-GGGGTCAGAGGTCAGC
AGGGGTCAGAGGTCA--
 A C G T A T C G C T A G A C T G A C T G A G C T A G T C C G T A T C A G C T G A A C T G A C T G A C G T A G T C C G T A A T C G A T G C
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:2
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GGGGTCAGAGGTCAGC
GAGGTCAAAGGTCA--
 A T C G C T A G A C T G A C T G A G C T A G T C C G T A T C A G C T G A A C T G A C T G A C G T A G T C C G T A A T C G A T G C
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T A C G T

RXRB/MA0855.1/Jaspar

Match Rank:3
Score:0.86
Offset:0
Orientation:forward strand
Alignment:GGGGTCAGAGGTCAGC
GGGGTCAAAGGTCA--
 A T C G C T A G A C T G A C T G A G C T A G T C C G T A T C A G C T G A A C T G A C T G A C G T A G T C C G T A A T C G A T G C
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T A C G T

RXRG/MA0856.1/Jaspar

Match Rank:4
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GGGGTCAGAGGTCAGC
GGGGTCAAAGGTCA--
 A T C G C T A G A C T G A C T G A G C T A G T C C G T A T C A G C T G A A C T G A C T G A C G T A G T C C G T A A T C G A T G C
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T A C G T

Rxra/MA0512.2/Jaspar

Match Rank:5
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GGGGTCAGAGGTCAGC
GGGGTCAAAGGTCA--
 A T C G C T A G A C T G A C T G A G C T A G T C C G T A T C A G C T G A A C T G A C T G A C G T A G T C C G T A A T C G A T G C
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:6
Score:0.84
Offset:0
Orientation:forward strand
Alignment:GGGGTCAGAGGTCAGC
GAGGTCAAAGGTCA--
 A T C G C T A G A C T G A C T G A G C T A G T C C G T A T C A G C T G A A C T G A C T G A C G T A G T C C G T A A T C G A T G C
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GGGGTCAGAGGTCAGC
TGGGGCAAAGGTCA--
 A T C G C T A G A C T G A C T G A G C T A G T C C G T A T C A G C T G A A C T G A C T G A C G T A G T C C G T A A T C G A T G C
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GGGGTCAGAGGTCAGC
GTAGGGCAAAGGTCA--
 A C G T A T C G C T A G A C T G A C T G A G C T A G T C C G T A T C A G C T G A A C T G A C T G A C G T A G T C C G T A A T C G A T G C
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.76
Offset:0
Orientation:forward strand
Alignment:GGGGTCAGAGGTCAGC
TAGGGCAAAGGTCA--
 A T C G C T A G A C T G A C T G A G C T A G T C C G T A T C A G C T G A A C T G A C T G A C G T A G T C C G T A A T C G A T G C
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:10
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GGGGTCAGAGGTCAGC
AAAGGTCAAAGGTCAAC
 A C G T A T C G C T A G A C T G A C T G A G C T A G T C C G T A T C A G C T G A A C T G A C T G A C G T A G T C C G T A A T C G A T G C
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C