Information for 9-ACTYCTATGCARA (Motif 9)

G C T A A G T C A C G T A G C T A G T C A C G T G T C A A C G T A C T G A G T C C G T A C T A G G T C A
Reverse Opposite:
A C G T A G T C A C G T T C A G A G T C C G T A A C G T C G T A A C T G C T G A C G T A T A C G C A G T
p-value:1e-13
log p-value:-3.209e+01
Information Content per bp:1.796
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.9 +/- 26.1bp
Average Position of motif in Background57.7 +/- 10.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU5F1B/MA0792.1/Jaspar

Match Rank:1
Score:0.71
Offset:5
Orientation:forward strand
Alignment:ACTYCTATGCARA-
-----TATGCAAAT
 G C T A A G T C A C G T A G C T A G T C A C G T G T C A A C G T A C T G A G T C C G T A C T A G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

POU3F4/MA0789.1/Jaspar

Match Rank:2
Score:0.70
Offset:5
Orientation:forward strand
Alignment:ACTYCTATGCARA-
-----TATGCAAAT
 G C T A A G T C A C G T A G C T A G T C A C G T G T C A A C G T A C T G A G T C C G T A C T A G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T

Pou2f3/MA0627.1/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:ACTYCTATGCARA-----
--TTGTATGCAAATTAGA
 G C T A A G T C A C G T A G C T A G T C A C G T G T C A A C G T A C T G A G T C C G T A C T A G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:4
Score:0.69
Offset:2
Orientation:forward strand
Alignment:ACTYCTATGCARA-----
--TTGTATGCAAATTAGA
 G C T A A G T C A C G T A G C T A G T C A C G T G T C A A C G T A C T G A G T C C G T A C T A G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.68
Offset:2
Orientation:forward strand
Alignment:ACTYCTATGCARA-----
--TTGTATGCAAATTAGA
 G C T A A G T C A C G T A G C T A G T C A C G T G T C A A C G T A C T G A G T C C G T A C T A G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.67
Offset:4
Orientation:forward strand
Alignment:ACTYCTATGCARA-
----ATATGCAAAT
 G C T A A G T C A C G T A G C T A G T C A C G T G T C A A C G T A C T G A G T C C G T A C T A G G T C A A C G T
A C G T A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:ACTYCTATGCARA-
----TTATGCAAAT
 G C T A A G T C A C G T A G C T A G T C A C G T G T C A A C G T A C T G A G T C C G T A C T A G G T C A A C G T
A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:8
Score:0.66
Offset:5
Orientation:forward strand
Alignment:ACTYCTATGCARA----
-----TATGCWAATBAV
 G C T A A G T C A C G T A G C T A G T C A C G T G T C A A C G T A C T G A G T C C G T A C T A G G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-ACTYCTATGCARA-
CATTGTTATGCAAAT
 A C G T G C T A A G T C A C G T A G C T A G T C A C G T G T C A A C G T A C T G A G T C C G T A C T A G G T C A A C G T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

POU2F1/MA0785.1/Jaspar

Match Rank:10
Score:0.66
Offset:3
Orientation:forward strand
Alignment:ACTYCTATGCARA--
---AATATGCAAATT
 G C T A A G T C A C G T A G C T A G T C A C G T G T C A A C G T A C T G A G T C C G T A C T A G G T C A A C G T A C G T
A C G T A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T